Trichomycterus rosablanca: 134332447
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Entry
134332447 CDS
T09921
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134332447 (vps50)
Membrane trafficking [BR:
trn04131
]
Protein recycling
Others
EARP complex
134332447 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
134332447
NCBI-ProteinID:
XP_062870171
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All DBs
Position
2:complement(29472558..29730847)
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AA seq
965 aa
AA seq
DB search
MQKIKSLMSRQGLKSPQESMTDMSPVESFRVPSKEELRELRQQPIDPQAEQEIIDSVEEV
YYSDDSFDMVQYELERLPPELNLQDLEGYRDMRKKQQEAVSKRVADLILEKQPSYVKELE
RVTSLQTNLHLAAVICTNSRRHLAFAKEGFTQASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKNFDVAHYTRVQLAYSLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLTDLCKALWEVMLSYYQTMQWHEEHDKEETKDSAED
GITEEGSGESAVGHSYVKKKLEHGLSRIWQDVQLKVKAYLLGTDMSNFKYDDFIVVLDVI
SRLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFS
IAQLHEFKFMGQCRSPSVSPSRKPVSFDPKDLSLFEQYLQGGNPFEMQIDNKEEESEDVL
ASNGYESDEIEKNVYQDYDSDSDVADELKQDFVDEQTGDIPNKSVSRETLRSRKRSDYSL
NKANAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDL
YESSGLGLISSRLRTTLNRIQESLIDMETGGENAGSHGPSEERKEKVPSPHLSQLVVLTT
SDTLYGLAERVVATESLVFLAEQFELLQPHLDTMMPPAKKPFLQQFYSQTVSTASELRKP
TYWIVAAKAIDYEQMLLLMAGVKWDIKEIMSQHNVYVDVLLKEFDEFNKRLSDVSRQVRI
PLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDLRPIPD
KEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDDI
DRPKR
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctgatgtcccgacagggcttgaaaagccctcaggagagcatg
acagacatgagtcctgtggagagcttcagagtccccagcaaggaagagctgcgggagctg
aggcagcagcccattgatccacaggctgaacaggaaatcattgatagcgttgaggaggtg
tattactccgacgactcctttgacatggtgcagtatgagctggagagactccctccagag
ctaaaccttcaggacctggaagggtaccgagatatgcggaagaagcagcaagaagctgta
tcaaagagagtagcagaccttattttagagaaacagccatcctatgttaaggaactggag
agagttacgtcactccagaccaacctgcatctggctgctgtcatctgcaccaactctagg
aggcatcttgctttcgctaaagaaggcttcacccaagcgagtctcgggctcctggccaac
cagagacgcaggcagctgttaacaggattgttaaaatctttgaggaccataaagacactg
caaagaacagatgttaggctaagcgagatgctggaggaggaagactatccaggtgcgatc
cagttgtgcttggaatgtcagaaggcggctagcactttcaagcactacagctgcataagt
gaactcaattcaaagctgcaggacacccttgagcaaatcgaggagcagctagatgtggct
ctgtccaaaacctgtaaaaacttcgacgttgcacactacacccgagttcagcttgcatac
tcacttctgggcaagacacagacggctatggatcagcttcacatgcacttcacccaggcc
attcacaacaccgtgttccaggtggtgctgggatatgtggaactctgtgctggcaatgct
gacaccaaattccagaagatgcaatataaagatctctgcacgcatatcactccagacagc
tacattccctgcctgactgacctgtgcaaagcgttgtgggaggtgatgctcagctactac
caaaccatgcagtggcatgaggagcacgataaagaggagaccaaggacagtgctgaagat
ggtattactgaagaaggctcaggtgagtctgcagttggccacagctatgtaaagaagaaa
ctcgagcatggcctgagtcgaatttggcaggatgtccagctgaaagtgaaagcctattta
ctggggacggacatgtccaacttcaaatatgacgacttcattgtggtgttggacgttatc
agcaggttaatgcaggtaggagaggaattctgtggcagcaagtcagaggtgctgcaggag
tccataaagcgccagagtgtgaactactttaaaaattatcacagaacgcgtttggaggag
ctgcggatgtttttggagaatgaaacatgggagttgtgccctgtcaagtccaacttcagt
atcgctcagctccacgagtttaagttcatgggccagtgtcgatctccgtctgtgtcacct
agcagaaagccagtctcctttgatccaaaagatctctccctgtttgagcagtaccttcaa
ggaggaaacccttttgagatgcagattgacaataaggaagaggaaagtgaagatgtactg
gcctccaatgggtatgagtctgatgagatagagaagaatgtgtatcaggactatgacagt
gacagtgatgttgcagatgaacttaagcaagactttgtagatgagcagactggagacata
ccaaacaagagcgtatccagagagactctgcgtagcagaaagaggtccgactacagcctg
aacaaagccaatgcccccatcctgaccaacaccactctaaacgtgattcgcctggtgggc
aagtacatgcagatgatgaacattttgaaacccatcgccttcgacgtcatccattgtgtg
tcacagctctttgattactacctgtatgcagtctataccttttttggccggaacgacctg
tatgaatcttctgggctaggcctgatcagcagcagactgaggacgacgctcaaccgcatc
caggagagtcttatagacatggagacaggaggggagaatgcaggctcccatggcccctca
gaggaaagaaaggagaaggtacccagtcctcatctgagtcaactggtggtgctaaccact
agtgacacattatatggcctggcagagcgagtagttgccaccgaatcactagtgttcctg
gccgaacagtttgagcttcttcagcctcatctggacaccatgatgcccccagccaagaag
cccttcctccagcagttctactcacagactgtttccacggccagcgaactacgcaagccc
acttactggatagtggcggccaaagccattgattatgagcagatgctgctgctgatggct
ggagtgaaatgggacattaaagagataatgtcacagcacaatgtctatgtggatgtcctt
ttaaaggagtttgatgagttcaataaaagactcagtgacgtctccagacaagtgcggatc
ccacttcctgtgtctaacgtcttatgggagcactgcattcgtctggccaaccggacactg
gtggagggctatgctaatgtgaagaagtgcagtaacgagggccgagccctgatgcagctc
gactttcagcagttcctcatgaaacttgagaagcttactgatctcagacccatccctgat
aaggagtttgtggagacctacatcaaagcctattacctgactgagaatgacatggagcag
tttatcaagaatcacagggaatactccatgaagcagctggccaacctggtgaacgtctgc
ctcggctctcacatcaacaagaaggccagacagaaactgctcgcagctattgatgacatc
gacagaccaaaaagataa
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