Trichomycterus rosablanca: 134332905
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Entry
134332905 CDS
T09921
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134332905 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134332905 (smfn)
03009 Ribosome biogenesis [BR:
trn03009
]
134332905 (smfn)
Messenger RNA biogenesis [BR:
trn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
134332905 (smfn)
Ribosome biogenesis [BR:
trn03009
]
Eukaryotic type
Pre-60S particles
RNases
134332905 (smfn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
134332905
NCBI-ProteinID:
XP_062870809
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Position
18:complement(9991247..10001915)
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AA seq
270 aa
AA seq
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MAALGRIAACPYRSTVFTRALLVRTCNTKIKELYINPRASYHYYTQCLINNKSLVLNTEQ
YRRRMSSLSVSKMNQRMVWVDLEMTGLDIEKDEIIEMACIITDSDLNIIEEGPNLIINQP
NELLDGMSDWCKEHHGKSGLTQAVRDSKITLQQAEYEFLSFIRKHTPPGHCPLAGNSVHA
DKKFLDKHMPQFMHHLHYRIIDVSTVKELCRRWFPQEFKQAPQKKASHRALDDIQESIKE
LKFYRANIFKSEDDDRKRKLVDNGDAKRTT
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactggggaggatagcagcgtgtccatacagaagcactgtatttaccagagct
cttctcgttcgcacgtgtaatactaaaattaaagaattatatattaatcccagagcatca
tatcattattatacacagtgcctgattaataataagagcttggtgttaaatacagagcag
tacaggagaagaatgtcttcattatcagttagcaagatgaatcagaggatggtgtgggtc
gatctggagatgactggactggacatagaaaaagacgagattattgaaatggcgtgtatc
atcacagactcagatctcaacatcatagaagagggtcctaatttgatcatcaaccagccg
aacgagctgctggacggcatgtccgattggtgcaaggagcatcatgggaaatctggacta
acacaggcagtgcgggacagtaagatcacgctgcagcaggccgagtacgagttcctgtcc
ttcatcaggaaacacaccccgcccgggcattgccccctagctgggaactcggtacatgct
gataagaagttcctggataagcacatgccccagttcatgcatcacctgcactaccgcatc
atcgacgtgagcacggtcaaggagctctgcagacgctggtttccacaagaattcaagcaa
gcaccacagaagaaagcttcacacagagcgctggatgacattcaggagagcatcaaggag
ctcaagttttaccgagcgaacatctttaaatctgaagacgacgacaggaaaagaaaacta
gtagacaacggagatgccaaacgcacgacttaa
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