KEGG   Trichomycterus rosablanca: 134332905
Entry
134332905         CDS       T09921                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
trn  Trichomycterus rosablanca
Pathway
trn03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:trn00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    134332905 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:trn03019]
    134332905 (smfn)
   03009 Ribosome biogenesis [BR:trn03009]
    134332905 (smfn)
Messenger RNA biogenesis [BR:trn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     134332905 (smfn)
Ribosome biogenesis [BR:trn03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    134332905 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-GeneID: 134332905
NCBI-ProteinID: XP_062870809
LinkDB
Position
18:complement(9991247..10001915)
AA seq 270 aa
MAALGRIAACPYRSTVFTRALLVRTCNTKIKELYINPRASYHYYTQCLINNKSLVLNTEQ
YRRRMSSLSVSKMNQRMVWVDLEMTGLDIEKDEIIEMACIITDSDLNIIEEGPNLIINQP
NELLDGMSDWCKEHHGKSGLTQAVRDSKITLQQAEYEFLSFIRKHTPPGHCPLAGNSVHA
DKKFLDKHMPQFMHHLHYRIIDVSTVKELCRRWFPQEFKQAPQKKASHRALDDIQESIKE
LKFYRANIFKSEDDDRKRKLVDNGDAKRTT
NT seq 813 nt   +upstreamnt  +downstreamnt
atggcggcactggggaggatagcagcgtgtccatacagaagcactgtatttaccagagct
cttctcgttcgcacgtgtaatactaaaattaaagaattatatattaatcccagagcatca
tatcattattatacacagtgcctgattaataataagagcttggtgttaaatacagagcag
tacaggagaagaatgtcttcattatcagttagcaagatgaatcagaggatggtgtgggtc
gatctggagatgactggactggacatagaaaaagacgagattattgaaatggcgtgtatc
atcacagactcagatctcaacatcatagaagagggtcctaatttgatcatcaaccagccg
aacgagctgctggacggcatgtccgattggtgcaaggagcatcatgggaaatctggacta
acacaggcagtgcgggacagtaagatcacgctgcagcaggccgagtacgagttcctgtcc
ttcatcaggaaacacaccccgcccgggcattgccccctagctgggaactcggtacatgct
gataagaagttcctggataagcacatgccccagttcatgcatcacctgcactaccgcatc
atcgacgtgagcacggtcaaggagctctgcagacgctggtttccacaagaattcaagcaa
gcaccacagaagaaagcttcacacagagcgctggatgacattcaggagagcatcaaggag
ctcaagttttaccgagcgaacatctttaaatctgaagacgacgacaggaaaagaaaacta
gtagacaacggagatgccaaacgcacgacttaa

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