Trichomycterus rosablanca: 134333112
Help
Entry
134333112 CDS
T09921
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
trn
Trichomycterus rosablanca
Pathway
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134333112 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134333112 (hbs1l)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134333112 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
134333112
NCBI-ProteinID:
XP_062871019
LinkDB
All DBs
Position
19:2648778..2686310
Genome browser
AA seq
724 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEEDDIYGQSVDDDYCISPATAAQFIYSRQDSRQARQVEPLEEEE
HEEEEEIPASPSATLVLDPLEQGRLYSCLDQMRAVLGDTVLDSTLSQAALKYDCDPQRAL
DSILSAESSSSNSRTQTTAPPTQHPPQKGVLSHSTRNSTHTHTHTPATTLPLSLGDLLAT
SEPNKLNGSGRGSDSAKAREVPEVRLESEVLPKVARMTVSGKKQTMGFDVPSSEENCVAP
CLHGGPGPEVTPVAAPETPSKPACAVEESAVPTPPRSASKNKHQLNIRAELEQRQGGKPL
LNLVVVGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKAGKASFAYAWVLDETGEER
DRGVTMDVGMTKFETTSKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGF
EAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQQRFQEITSKLGHFLKQAGFKDSDIY
YIPTSGLSGENLTTRSKAAELIAWYNGPCLLEQIDRFKAPQRSVEKPFRLCVSDVFKDQG
SGFCVTGKIEAGFIQTGDRVLAMPPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDII
KINVGCVFCDPKEPIKACTRFRARILLFNIEVPVTQGFPVLLHYQTVSEPATIRKLVSVL
HKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVT
EIKE
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccacaggaacgttcgaggctataattacgatgaagattttgaggaagatgac
atttatggacagtcagtggacgatgattattgcatctctcccgctacagccgctcagttc
atttactcgcggcaggactcgcggcaggcgcggcaggtagagccgctggaggaagaagaa
catgaggaagaggaggagattccagcctcaccctccgccacgctcgtgctcgaccccctg
gaacaaggccggctgtactcttgtctggaccagatgcgtgcggtgctgggagacacggtc
ctggactcgaccctgagccaggctgctctgaagtacgactgcgatcctcagagagctctc
gactccattctgtcagcagaaagcagcagcagcaacagcagaacacagacgactgcacct
ccaacccagcatccaccacagaaaggagttttatcccactccacacgaaacagcacacac
acacacacacacacaccggcgacgacacttccgctcagcctcggcgatcttttagccacg
tctgagccgaacaagctcaacggctccggtcggggttccgattcagctaaagcccgcgag
gttcccgaggtgcgtctggagtctgaggtgcttcccaaagtggctcggatgacggtgtct
ggaaagaagcagaccatgggcttcgacgttccaagctcggaggagaactgcgtcgcccca
tgcctacacggaggtccgggtccagaagtgacccccgtcgcggctccagagactccgtct
aaaccagcgtgcgcggtggaggaatcggcggtcccgaccccgccgcgttctgcaagcaaa
aacaaacatcagctcaacatccgagctgaacttgagcagaggcaggggggtaaaccgctc
ctcaacctggtggtagtaggtcatgtggatgccggtaagagcactctgatgggtcatctg
ttgtacttgctgggaaacgtgaacaaacgcaccatgcacaagtacgagcaggaggccaag
aaagctggcaaggcgtcattcgcctacgcatgggtgctggacgagaccggagaagagaga
gacagaggagtgaccatggacgtcggcatgaccaagtttgaaaccacctccaaagtggtg
acattaatggacgcgcctggacacaaagattttattcccaacatgatcaccggagcagcg
caggcagacgtagccgtgctggtcgtggacgccagccggggggagttcgaggctgggttc
gaggcgggcggtcagacccgagagcacgccctcctcgttcgatctctcggcgtcacgcag
ctcgccgtcgccgtcaacaagatggatcaggtgaactggcagcagcagaggttccaagaa
atcacctccaaacttggccactttctcaagcaagccgggttcaaggactcggatatttat
tacatccccaccagcggcctttcaggagagaatctcaccaccaggagcaaagcggcagag
cttatagcctggtataacggcccatgtctcctggaacagatagaccgattcaaagctcct
cagaggtctgtggagaaacccttcagactctgtgtctcggacgtctttaaagatcagggc
tcaggcttctgtgtgacggggaagatcgaggctggattcatacagacaggagaccgagtg
ctggccatgcctcctaatgagacctgcactgtgaaaggcatcactcttcatgatgaggcg
ctagactgggcagctgctggtgaccacgtcagtctgaccgtcactgggatggacatcata
aagattaatgtcgggtgtgttttctgtgaccctaaggagcccattaaggcttgtacacgt
ttccgggccagaatcctgttgtttaacattgaagttccagtaacacaaggttttcctgtg
ctgttacactaccagacagtcagtgaacctgccaccatcaggaaactggtcagtgtttta
cataagagcagcggagaggtgctgaaaaagaaaccaaagtgtttaagtaaaggccagaac
gctgtggtggagatccagacccagagacccgtggctctagaactctataaggactttaaa
gagctcggacgcttcatgctgcgttatgtcggctccaccatcgccgccggggtcgtcaca
gagatcaaagaataa
DBGET
integrated database retrieval system
