Trichomycterus rosablanca: 134333615
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Entry
134333615 CDS
T09921
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134333615 (clstn1)
Cell adhesion molecules [BR:
trn04515
]
Cadherins
Cadherin related
134333615 (clstn1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Cadherin_C_2
Neur_chan_memb
Adeno_shaft
V_ATPase_I
EphA2_TM
Toxin_R_bind_N
PRIMA1
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
134333615
NCBI-ProteinID:
XP_062871752
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All DBs
Position
19:complement(5221643..5255148)
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AA seq
984 aa
AA seq
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MRNGRSGPVCRAGGLPLLLLGLLCAVEAAKVNKHKPWIETTFHGIVTENDDKVLLDPPLI
ALDKDAPLRYAESFEVTLTKEGEICGFRIHGQDVPFEAVMLDKSSGEAVIRAKEKLDCEL
RKEHTFTIQAYDCGEGPDGDNMKKSHKATVHIQVNDVNEYSPVFKEKSYKATVIEGKSYD
SILKVEAVDADCSFQYSQICSYDIVTPDVPFTIDKDGNIKNTEKLNYSKERVYKLTVTAF
DCGKNRASEDVLVRINVKPTCKPSWQGFNKRTEYEPGTGSLALFPSIHLETCEEPITSIR
ASIELETNHIGKGCDRDTYSEKSLHRLCGASAGTMELLPAPSSATNWTAGLPTDNGHDSD
QVFEFNGTQAVKVPDGVISTNLKEPFTISVWMRHGPGSREKETILCNSDKTEMNRHHYSL
YVHNCRLVLLLRQDPSEAENYKPAEFHWKLDQICDKEWHHYVLNIEFPAVTLFVDGASFE
PFLVTEDYPLHASKIETQLTIGACWQDLTGHDNDTETVSEPVTGGVGRMTQYFRGNLAGL
MIRTGKLENKKVIDCLYTCKEGLDVQLPEEVASSVKVDFNPNQSSLTLEGDDIESFEKVM
QHISYLNSRQFPTPGIRHLRITTTVKCFNEETCISVPDAEGYVMVLQPEEPKISLSGIDH
FARGAADFESVEGVTLFPELRVVSTITREVETETEPESETEGEDEPTVQESVVSEEIMHN
LDTCEVTVVGDELNGDHESLEVDLAQVQQRGLDISSSNVGMVVTGVNTMTNYEQVLHLIR
YRNWHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPVEHANNAMYQPQFINQVK
HASVDLSGHNLANTHQASVVPSAATIVIVVCVSFLVFMIVLGVFRIRAAHQHTMKDQENG
KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEEGEEEDDITSAESESSEDEDG
AEQEDQQAGNRQQQLEWDDSTLTY
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcggaacggcaggtccggacctgtgtgtagagcaggcggtctgccgctgttgctgctc
ggattgctgtgcgcagtggaggcagctaaagttaacaagcacaagccatggattgagacc
acatttcatggaattgtgacagaaaatgatgacaaagttcttttggaccctccactaata
gccctggataaagatgctccgctacgttacgctgagagttttgaggtgacccttacaaaa
gaaggggagatttgtggcttccgcattcatggacaagatgtgccattcgaggctgtgatg
ctggataagtcttcaggtgaagcagtgatccgggcaaaggagaaactggactgtgagctt
agaaaagagcacaccttcaccatccaggcctatgactgtggagagggtcctgatggggac
aacatgaagaaatctcacaaggcgacagtccatattcaagtgaacgatgtgaatgagtat
tcacccgtgttcaaggagaaatcatacaaagccacggtcatcgagggcaaatcatatgac
agcatcctaaaggttgaggcagtggatgctgactgctctttccagtacagtcagatttgc
agctatgatatcgtcacccctgatgtgcccttcactattgacaaggacggcaacatcaag
aacacggaaaagctgaactacagtaaggagcgtgtttacaagctaacggtgactgcattt
gactgtggaaagaaccgagcctctgaggatgtcctcgtcagaatcaacgtcaaaccaacc
tgcaaaccaagctggcaaggctttaataagagaactgagtatgagcccggcacaggaagt
ctagccctgttccctagcattcatctagagacctgcgaggagccgattacctccatccgg
gccagcattgagctggagaccaaccacattggcaaaggctgtgacagagacacatactcc
gaaaaatccctgcaccgcctgtgtggtgccagtgcaggcacaatggagctgcttcctgct
cccagcagtgccaccaactggactgcaggactccccactgataatgggcatgacagtgac
caagtttttgagtttaatggcactcaagctgtaaaagtgcctgatggtgtgatcagtacc
aacctgaaggaaccctttaccatctcggtgtggatgagacatgggcctggtagccgcgag
aaagaaaccattctctgcaactctgataagacagagatgaacagacatcattactccctg
tatgtacataattgtcgcctggtgttgctcctgcgtcaggacccgagtgaggcagagaac
tataaaccagctgagttccactggaaacttgaccaaatctgtgataaagagtggcaccac
tatgtgctaaacatcgagttcccggcagtgactctgtttgtggatggagcctcctttgag
cctttcctagtcacagaggattacccactccatgcctctaagattgaaacccagctcact
attggtgcttgctggcaagacctcacaggacatgacaatgacactgagacagtctcagag
cctgtgacaggaggcgtcggccgcatgactcagtacttccggggtaatttggcaggtctg
atgattcgcacaggaaaactggagaacaagaaagtgattgactgtctgtacacatgtaag
gagggactggatgtgcagcttccagaggaggttgcttcttctgtaaaggtggactttaac
cccaatcagtcttctctgactctggaaggagatgatattgagagctttgaaaaggtcatg
cagcacatctcttacttgaactccaggcaatttcccacaccgggaataaggcacttacgc
atcaccaccacagtcaagtgcttcaatgaggagacatgcatctcggtgcctgacgctgaa
ggctacgtcatggtacttcagccagaggagcccaaaatcagcctgagcggtatagaccac
tttgcacgtggagcagctgactttgagagcgttgagggtgtgactctgttcccagagctg
cgtgttgtgagcaccatcacacgtgaggtggagactgagactgagcctgagtctgaaact
gagggagaggatgagccaacagtgcaagagtctgtggtttctgaagagatcatgcacaac
ctagacacatgtgaagtgactgtagtgggggatgaactgaatggagatcatgagagtctg
gaggttgatttggctcaggttcagcagagaggcctggatatcagctcatctaatgtcggc
atggttgtcactggtgtgaacaccatgaccaactatgagcaggtgctgcatcttatccgc
tacagaaactggcacaccgaggctttatttgacaggaaattcaagctggtctgctccgaa
cttaacggtcgctacatcagcaacgacttcaaggttgaggtcaacgtcatccacacagct
aacccagttgaacatgctaataatgccatgtatcagcctcagttcatcaaccaagtcaag
catgcctcagtggatctgtctggtcacaacctggccaacacacatcaggcttcagttgta
cccagtgccgccaccattgtcatagtggtgtgtgtaagcttcctggtgtttatgattgtt
ctgggagttttccgtattcgtgccgctcatcagcacaccatgaaagaccaggagaatgga
aaagagaatgaaatggactgggatgactctgccctcaccatcaccgtcaacccaatggag
acttatgaggaccagcacagcagtgaggaggaggaggaagaggaggaggagagtgaggaa
ggtgaggaggaagacgatatcaccagtgcagagtctgagagcagcgaggacgaggatgga
gccgagcaggaggaccagcaggccggtaaccgacagcagcagctcgagtgggacgactct
actcttacctactga
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