Trichomycterus rosablanca: 134333634
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Entry
134333634 CDS
T09921
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6 isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134333634 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134333634 (prpf6)
Spliceosome [BR:
trn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134333634 (prpf6)
Complex C
U5 SnRNP specific factors
134333634 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
HAT_PRP39_C
TPR_16
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
FAT
ARM_TT21_2nd
TPR_1
ARM_TT21_C
ARM_TT21_5th
T7SS_EccA1_N
Dehydratase_MU
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
134333634
NCBI-ProteinID:
XP_062871794
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All DBs
Position
19:12940779..12997595
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AA seq
972 aa
AA seq
DB search
MSSAAMKAPSKNPQKTSTGTNVGNVPSGPALPLASPLMGKKKKPFLGMAAPLGYVPGLGR
GATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKSNQDDDDEDLNDTNYDEFNGY
AGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFSD
LKRKLAEVTEEEWLSIPDVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGDNHTTVDPLQ
GQFGGLNTPFPGGLNTPYPGGMTPGAGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVD
PKGYLTDLNSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVAR
NLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAK
KRVLRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENA
RRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQD
AEECDKAGSVATCQAVIRAVIGIGIEEEDCKHTWMEDADSCVAHGALECARAIYAHALQV
FPSKKSVWLRAAYFEKSHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARS
ILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLG
NISAAQELCSEALKHYEDFPKLWMMKGQIEEQPENFDKAREAYSQGLKKCPHSMPLWLLL
SRLEERAGQLTRARAILEKSRLKNPQTPELWLESVRLEYRAGLKNIANTLMAKALQECPS
SGILWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVK
IEPDLGDAWALFYKFELQHGTEEQQEEVKKCCENAEPRHGELWCTESKHILNWQKKIGEI
LVLVAAKIKNTF
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcgcggcaatgaaagcaccctcaaaaaatcctcaaaaaacctctacagggacc
aatgttggaaatgttccgagcggccccgctcttcctttggcatctcctcttatgggcaaa
aagaagaagccctttctgggtatggcagcgcccctcggctatgttcctggtctaggcaga
ggtgccactggtttcactacgcgatctgatattggccccgctcgagatgcgaacgatcct
gtggatgaccggcatgcgcctcctgggaaaagaacagttggtgatcaaatgaaaaagagc
aaccaagatgatgatgacgaggacctaaacgacaccaactatgatgagtttaatggttat
gctggtagcctattctccagtggcccatatgagaaggatgacgaagaagcagatgccata
tatgcagcacttgacaaacgaatggatgaacgaagaaaggagagaagagagttgagagag
aaggaggagatcgagaagtatcgtatggagcggcccaaaattcaacagcagttttcagat
ctaaagcgaaaactagctgaggtaacagaagaggagtggttgagcattccagatgttggt
gatgccaggaataagaggcaaaggaacccacgttatgaaaaactaacacctgtgcctgac
agcttttttgccaaacacctccagactggggataaccacaccactgttgacccacttcag
gggcaatttggtggtttgaacacaccatttcctggaggcttaaacacaccttatccaggt
ggcatgaccccaggagcaggagaacttgacatgaggaaaattggccaagccagaaacact
ttgatggacatgcggctaagtcaggtttcagactctgtaagtggacagacagtagtggac
cctaaaggctacttaacagacctcaactcaatgatccctacgcacggaggtgacatcagt
gacattaagaaggcacgtctgctattaaagtcagtgagagagacaaaccctcaccaccct
ccggcctggattgcctcagcacgtctggaggaggtgacaggaaaactacaggtggccaga
aaccttatcatgaaaggcactgaaatgtgtccaaagagtgaggatgtgtggctggaggct
gcacgcttacagcctggagacacagcaaaggctgttgttgcacaagcagtgcgtcactta
ccccagtctgtgcgcatctatattcgagctgctgagcttgagactgacatcagggctaag
aaacgggttctaagaaaagctcttgagaatgtttctaagtcggtgcgtctttggaagacg
gctgttgaactggaggagcccgaggatgcccgaatcatgctgagcagagctgtggagtgc
tgcccaactagtgtggagctttggctcgctctggcccgattagagacttatgagaatgct
agacgtgttttgaacaaggcacgtgagaatatccccaccgatcggcacatctggatcaca
gctgccaagctggaggaagccaatggcaacacacagatggtggaaaagattattgacaga
gctataacctcgcttagagccaatggagttgagattaaccgtgagcagtggattcaggat
gcagaagaatgtgataaagcaggcagtgtggccacgtgtcaggctgtgatcagagcagta
attggtatcggaatcgaggaggaggactgtaaacacacatggatggaggatgcagacagc
tgtgtggctcatggtgcactggagtgtgctcgtgctatctacgctcatgcgctgcaagtc
tttcccagcaagaagagtgtgtggctgcgagcagcttattttgagaagagtcatggcaca
cgagagtctttggaggcacttctacagagagcagtagctcattgtcccaaggcagaggtt
ctgtggctgatgggtgcaaaatccaagtggctggctggagatgtgcctgcagctcgaagc
attctagcactggccttccaggccaaccctaacagtgaggaaatctggctggctgctgta
aagttggagtcggagaataatgagtacgagagggctagaaggcttctggccaaagctcga
agcagcgctccaactgccagagtttttatgaagtctgtgaagttagagtgggtgcttggg
aacatctcagcagcccaagaactttgctctgaggcactgaagcactatgaggacttcccc
aagctctggatgatgaagggtcagattgaggaacagcctgagaactttgacaaggctcga
gaggcctacagccaagggcttaagaagtgtcctcactctatgcctttgtggctactactc
tcgcgtctggaggaaagagcgggccagctgacacgtgcccgtgccattctagagaaatca
cgtctcaaaaacccacagaccccagaactttggttggagtcagtccggctggaatacagg
gcaggcctgaaaaatattgccaacaccctcatggctaaagccttacaggagtgccccagc
tctggtattctttgggctgaggctgtattcttggaggctagaccacaaagaaaaaccaag
agtgtcgatgcactgaagaaatgtgagcatgacccccatgttctactggctgttgcaaag
ttattctggagtgagagaaagataaccaaagcaagagagtggttcctgcgcacagtgaag
attgaaccagatctaggagatgcatgggcactcttttataaatttgagctacaacatggc
acagaggagcaacaggaagaagtgaagaagtgctgtgagaatgctgaaccacgccatgga
gagctttggtgcactgaatccaagcacatccttaactggcagaaaaagattggcgagatc
ctggtcttagtggctgccaaaattaaaaacacattttga
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