Trichomycterus rosablanca: 134334105
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Entry
134334105 CDS
T09921
Symbol
col4a4
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04382
Cornified envelope formation
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
trn04518
Integrin signaling
trn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134334105 (col4a4)
04518 Integrin signaling
134334105 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134334105 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134334105 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134334105 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134334105 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134334105 (col4a4)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134334105 (col4a4)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134334105 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134334105
NCBI-ProteinID:
XP_062872353
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All DBs
Position
20:complement(16639184..16731333)
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AA seq
1298 aa
AA seq
DB search
MGALGLPGMPGPPGIPVPGPIGEPGIMGFPGSKGQKGEPGNCVTSLLHGQPGQQGLPGLK
GVQGAPGSPGYYCIPGQTGDNGSCGDRGPSGPKGTIGRKGQNGECACELPPDVIGPKGQP
GDPGYAGEPGRQGFPGPQGENGLFGNPGLGGKCGIQGASGFRGRKGEKGDTYSVKGNKGD
IGPKGLAGQSGCFGRKGDTGEPGPAGDCGPVGESSPGCSGEIGYPGETGAKGQRGLPGPQ
GPGFSGSVGQRGQAGDPGPEGLQGIPGPKGVRCDILPCSSVNKGAPGPKGEIGDKGFLGE
DGKPGPTGFNGPIGHKGEKGILGNPGTDGPTGLPGFCGDPGDNGPDGETYEGVPGICGNT
GPGGLKGLTGDSVVGAPGPMGPNGLIGQPGAKGVPGPPGPPGIKGITGAPGSKGRKGDPG
DCGLPGKEGFAGPPQTQCDAGSVGPIGKPGPPGNIGNPGYFGEKGLAGWPGPPGRGPKGL
TGKSGIPGVQGYPGQKGVTGPRGDSGSSACNGVRGMPGPPGRDGSPGGTGEKGYQGPPGL
KGERGFDGMPGFPGECGLPGAKGRIGDDGLPGEMYVIPTKGHRGLLGRPGNSGFPGQRGD
KGIKGHQGLDGYSGTCGPPGYEIGPQGPPGTYGKPGKPGIPGLPGPTGFTGFIGPTGDPG
ETGLTGPPGCPGPIGLTGLKGDKGDSLGEPGLPGQKGFHGDFGSCAFSGETGDPGDQGQP
GIFGLPGKPGLVGDRGFPGPPGVIGPPGVSGSCGIEGPQGHPGPPGPNGKPGCSGLQGPP
GPPGLNGLDGLNGEKGEKGAQGISSRGDTGPVGLTGDRGLIGDPGPPGPTQRGIQGPRGP
PGCAGGPGDAGPSGFSGEDCRNPKTGQCGEPGIMGPDGPPGPRGLVGDPGLTIPVHGDMG
VPGIPGYPGNKGNRGHTGSQGPPGSPGCPGPKGERGEPGFLGDSGPRGPPGTPGKPGPSG
LKGPSGDQGPCGEPGNVFSTGLQKAPQGPPGPPGDYGSLGHQGPPGVNGREGPKGMKGQV
GDPGLHGPPGAPGIDGPPGNPGLKGAIGPCGMQGPPGCPGDPGPHGPIIKYSFGFLLVLH
SQSTDVPLCPADMPKLWEGYSLLYLEGQEKAYNQDLGQAGSCVRVFSTMPFFHCNLGSCN
YANRIDKSYWLSTTTALPMIPLSGLEIQPHISRCVVCEAPSPAIAVHSQDTFTPSCPQNW
RSLWTGYSFLMHTGSGDEGGGQSLTSSGSCLQDFIRHPFVECQGPQGTCHYFANMFSFWL
TRVDEQEGVSDFMTLTAKSMQLTKVSQCNVCMRELFSS
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgttgggtttgcctggtatgcctggtccccctggaatacctgtaccaggtccc
attggtgagccaggaattatgggttttccaggatccaaaggacaaaaaggagagcctggg
aattgtgtgacctccttacttcatgggcaacctggacaacaagggcttccgggtttaaaa
ggagttcaaggggctcctggctctcctggatactactgcattcctgggcagactggagat
aatggaagctgtggagatagaggtccatctggtccaaaaggcaccattggaagaaaaggg
caaaatggtgaatgtgcttgtgagctaccaccagatgttattggcccaaagggtcagcca
ggtgatcccgggtatgctggtgaaccagggcgtcaagggtttcctggtccacagggtgaa
aatggtttatttggaaatcctggcctgggaggaaaatgtggtattcaaggggcttcagga
ttcagagggaggaaaggagaaaaaggagacacgtattctgtcaagggtaacaagggagac
attggcccaaaaggattggctggtcagtcaggatgctttggaagaaaaggggatacaggg
gagccaggacctgcaggagattgtggtccagtgggtgagagttctccaggatgttctggt
gagataggatacccaggagaaacaggtgctaaaggacaaagaggtcttccaggaccacaa
ggccctggattttctgggtcagttggccaacgaggacaagcaggagatccaggacctgaa
ggacttcaaggaattcctgggcctaaaggggttagatgtgatattttgccctgcagttct
gtcaataaaggagctccaggacctaagggagagattggggataaaggttttctaggggaa
gatggcaagccaggacccactgggtttaatggacccattggacacaagggagagaagggc
atcctgggcaatccaggcactgatggccctacagggttacctggtttttgtggagaccca
ggagacaatgggcctgatggagagacttatgaaggagtgcctgggatatgtggcaatacc
ggacctggtgggttaaaggggcttactggtgactcagtagtaggagctccagggccgatg
ggccctaatggcctcatcggacaaccaggagctaaaggagtccctggacccccgggacca
cctggtattaaaggtattactggtgcacctggttctaaaggtaggaaaggagatccagga
gactgtggcctgcctggtaaggaggggtttgctggaccacctcagacacagtgtgatgct
ggatcagtaggcccaattggtaaaccaggacccccaggcaacataggaaatccaggttac
tttggagagaaaggtttagctgggtggcctgggcctccaggtaggggacccaaaggtctt
actggaaaatctggcatacctggtgttcagggataccctggtcaaaaaggagtgactgga
ccaagaggtgatagtggatcatctgcttgtaatggagtgaggggtatgcctggaccacct
ggtagggatggttcacctggtggcactggtgagaaaggatatcagggtcctcctggctta
aaaggagagaggggatttgatggcatgccaggctttccaggggaatgtggcctgccagga
gcaaaaggcagaattggagatgatggactcccaggagaaatgtatgtgatacccactaaa
ggacatagagggcttctgggaaggcctggaaacagtgggtttcctggacagagaggtgat
aaaggtataaaaggtcaccaagggttggatggctattcaggcacttgtggacctccaggg
tatgagatcggccctcagggaccaccaggtacctatggaaagcctggtaaacctggaatc
cctggtttaccagggccaacaggctttactggatttattggaccaactggagatccaggt
gaaacagggttgactggaccaccaggatgtcctggtcccattggattgactggtctaaaa
ggcgataaaggagattctttaggtgaaccaggactccctgggcagaaaggatttcatggc
gattttggcagttgtgctttttcaggagaaacaggagatccaggtgatcagggtcagcca
ggtatatttggactaccgggcaaacctggtcttgttggtgacagaggtttccctggacct
ccaggagtaattgggcccccaggtgtcagtggaagctgtggtattgagggccctcagggc
catcctggacctcctggacctaatgggaagccaggttgctctggactacaaggtcctcct
ggaccacctggacttaatggattggatggtttaaatggtgagaagggtgaaaagggggca
caaggaatcagttcacgaggggacacagggccagtgggtctaacaggtgataggggttta
ataggagatcctgggcctccaggtcctacccagagagggattcagggccccagaggccca
cctggatgtgcagggggacctggtgatgctggaccttctggttttagtggtgaagactgt
aggaatcctaaaacagggcagtgtggagaaccagggattatgggtcctgatggcccacca
ggaccaagggggctagttggagatccaggcctgacaattcctgtgcatggggatatgggt
gtccctggaataccaggctaccctggaaataaaggaaacagaggacatactggttcccag
ggacctccaggaagtccaggctgcccagggccgaaaggtgagaggggtgagccaggcttc
cttggcgattctggaccaaggggaccaccaggaacacctggcaaaccaggacccagtggt
cttaagggaccatcaggagaccaaggcccctgtggagaaccaggaaatgttttttctact
ggtcttcaaaaagcaccccagggtccacctggacctcctggtgattatgggtcacttggc
caccaaggacctccaggagttaatggcagagagggtcctaagggaatgaaaggccaagtg
ggggatccaggattacatggcccaccaggagcacctggaattgatggacctcctggaaac
ccaggactaaagggtgccataggaccatgtggcatgcagggtcccccagggtgtccaggt
gatccaggtccacatggcccaatcatcaagtatagttttggtttccttttggttctccat
agccagtcaacagatgtacctttgtgccctgcagatatgcccaagctatgggaaggatac
agcttactgtacctggagggacaagagaaagcatacaatcaagatctaggtcaggcaggt
tcatgtgtgcgtgtctttagcactatgcctttctttcactgcaacttgggttcctgcaac
tatgcaaaccgtatcgacaaatcctactggctctccaccactacagcattacccatgatc
cctttgtcagggttggagatccagccgcatattagcaggtgtgtggtgtgtgaggctcca
tcaccagccattgccgttcacagccaggatacgtttacaccttcttgcccacagaactgg
aggagcctctggactggatattcatttctaatgcacaccgggtcaggagatgaaggtggt
ggccagtctttgacctcgtcaggaagctgcctgcaagattttattagacatccatttgtg
gagtgccagggcccacaaggcacatgccattactttgccaacatgttcagcttttggctt
acacgtgtggacgaacaggaaggtgtctcagattttatgactcttacagcaaagtccatg
cagctaaccaaagttagccaatgtaatgtctgcatgagggaacttttcagttcttaa
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