Trichomycterus rosablanca: 134334114
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Entry
134334114 CDS
T09921
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8 isoform X1
KO
K12856
pre-mRNA-processing factor 8
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134334114 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134334114 (prpf8)
Spliceosome [BR:
trn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134334114 (prpf8)
Complex C
U5 SnRNP specific factors
134334114 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
134334114
NCBI-ProteinID:
XP_062872366
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All DBs
Position
20:complement(7900649..7917593)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGLPPGVPPPAPVPDFMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPDEDSSVAEWLYEHQPLKDTTKFVNGTTYRRWQFTLPMMST
LYRLANQLMTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHEPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVDPFLKETPLYTDHTANGIALLWAPRPFNLRSGR
TRRAIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLVYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
ATESAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTVTEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccttcccttaccgaggagtaccaggcgggttgccaccaggtgttcctcct
ccagctccagttccagacttcatgactgaggagaaactgcaggaaaaagcccgaaaatgg
caacagctacaggcgaaaaggtactcggagaagaggaaatttggctttgtggatgctcag
aaagaggacatgcctcctgagcatgtgcgcaaaattatcagggatcacggagacatgacc
aacagaaagttccgtcatgacaaaagagtctaccttggtgctctgaaatacatgcctcat
gcagttcttaagttacttgagaacatgcccatgccctgggaacagatccgagatgtgcca
gtgctttaccacatcacaggagccatttccttcgtcaatgaaattccctgggttatcgag
ccagtctacatcgcacagtggggcactatgtggatcatgatgcggcgtgagaaaagagat
cgaagacacttcaagcgcatgcgtttccctccctttgatgacgaagagcctcccttggac
tatgcagataacatccttgatgtggagcccctggaagccattcagatggaactggacccc
gatgaggacagctctgtggctgaatggttatatgagcatcagcccctgaaggacaccacc
aagttcgtcaatggaaccacatacaggcgctggcaattcaccctgccgatgatgtccact
ctgtatcggttggccaatcagctgatgactgatcttgtggattacaattacttctatttg
tttgacctcaaagcctttttcacttcaaaggctcttaacatggccattcctggaggaccc
aaatttgagcctctggtcagggacatcaatctgcaagatgaagattggaatgagtttaat
gacattaacaagatcatcattagacagcctattaggactgagtacaaaattgctttccct
tacctgtacaacaatcttcctcatcatgtgcatctcacctggtaccacgagcctaatgtg
gtgttcatcaaaacggaagatccagatctgccggccttctacttcgaccctcttatcaat
cccatctctcacaggcactcagttaaaagccaggagccacttcctgatgatgatgaggag
tttgaacttcctgagtatgtggaccccttcctcaaagagacacctctgtatactgaccat
acagccaatggaattgcgttactttgggcacctcgtccattcaacctgcgctcaggaaga
acacgccgtgccattgacattccactggtcaagaactggtatcgtgaacactgtcctgca
ggccagcctgtgaaagtacgtgtctcgtaccagaaactgttgaagtactatgtgctcaat
gctttaaaacatagaccacctaaagcacagaagaagaggtaccttttccgttccttcaag
gccaccaaattcttccagtccaccaagctagattgggtagaagtggggcttcaagtgtgc
cggcagggttacaacatgcttaacctgctgattcacagaaagaacctcaattacttgcac
ttggactacaactttaacttgaagcctgtgaagaccctcaccacaaaagaacgtaagaag
tccagatttgggaatgcgttccacttgtgccgtgaggttctccgtctaagcaaactggtt
gttgatagccatgtgcagtacagactgggcaacgttgatgctttccagttgtcggatggg
ctgcagtacatttttgcccacgttggtcagctgactggaatgtatcgctacaagtacaag
ctgatgaggcagatcagaatgtgtaaggacttgaagcatctcgtttactatcgcttcaat
acgggtccagttggaaagggtccaggttgtggcttctgggctgcaggatggagagtctgg
ctgtttttcatgaggggcatcactcccctgttggagagatggctgggcaacttgctggcc
agacagtttgaaggtcgacactcgaagggagttgcaaagactgtgactaagcagcgtgtg
gagtctcactttgacttggaactgagagcagctgtaatgcacgacatcctggacatgatg
cctgagggcatcaaacaaaacaaggccaggactattctgcagcatcttagtgagtcctgg
aggtgctggaaggccaacattccctggaaggtgccaggccttcctactcctatcgagaac
atgatcttgcgctatgtgaaggccaaagcagactggtggaccaacactgcgcattacaac
cgagagagaatcaggagaggagcaacagtggacaaaactgtctgcaagaagaaccttggt
cgcctcacacgactctacctgaaggctgagcaggaaagacagcacaactacctgaaggat
ggtccatacatcactgcagaagaggcagtggccatctataccaccacagtgcactggctg
gagagtcggcgcttctctcccattcctttccctcctctctcctacaagcacgataccaaa
ctgcttatcctggctttggagagactcaaggaggcatacagcgtgaagtcgaggttgaat
cagtcccagcgtgaagagttgggactgattgagcaggcgtatgacaacccccacgaggct
ctttccaggatcaagcgtcacctcctcactcagagagctttcaaagaggtgggcattgaa
ttcatggacctgtacagtcacctggtgcctgtgtatgatgtggaacctctggagaaaatc
actgacgcttacctggaccagtatttgtggtatgaggctgacaagcgcagacttttccca
ccttggatcaaaccggctgacacagaacctccgccgctgcttgtctacaagtggtgccaa
ggaatcaacaacctacaggatgtgtgggagactgcagaaggagagtgtaatgtcatgctg
gaatcacggtatgagaagatgtatgagaagattgacttgacgctgctgaataggctgttg
cgtctcattgttgaccacaacattgctgattacatgacggccaagaacaacgttgtcatc
aactacaaggacatgaaccacaccaactcctatggcattatccgaggcctgcagtttgcc
tccttcattgtgcagtactatgggcttgtaatggatttgcttgtcttgggtctgcatcgt
gccagtgaaatggctggacccccacagatgcccaatgatttcctcagctttcaggacagt
gctacagagagtgcccacccaatccgcctgtactgcagatacattgatcgtatccacatg
ttcttcaggttttctgctgatgaggccagggaccttatccagcgctatctcactgagcac
cctgatcccaacaatgagaacattgtaggctacaacaataagaaatgctggcccagagat
gccaggatgagattgatgaagcatgatgttaacctgggccgtgcagtgttttgggacatt
aagaatcgactgcctcgctctgtgaccactgtgcagtgggagaacagctttgtatctgtc
tacagcaaagacaaccctaacctgctttttaacatgtgtgggtttgagtgccgcatcctg
cctaaatgccgcaccagttatgaagagtttacacacaaggatggtgtgtggaacctgcag
aatgaggtgaccaaggaaaggacagcccagtgtttcctgcgagtggatgatgaatcgatg
cagaggttccataacagagttcgacagattctcatggcttctggatctaccaccttcacc
aagattgtaaacaaatggaatacggctctgattggtctaatgacctatttccgagaggct
gtggtaaacactcaagaattgctggacctattggtgaagtgtgaaaacaagatccagact
cgtatcaagattggtctgaactccaaaatgccaagtcgtttcccacctgtggtcttctac
acccccaaagagctggggggtctgggtatgttgtccatgggtcacgtcctcatccctcag
tctgacctgaggtggtccaaacagacagatgtgggcatcacacatttccgctctggtatg
agtcatgaggaggatcagctgattcctaatctgtatcgctacatccagccatgggagagt
gagttcattgactctcagagagtttgggctgaatatgccctcaagagacaggaagccatc
gcccagaacagacgtctgacacttgaggatctggaggattcatgggacagaggtattcct
cgtatcaacacgctgttccagaaagacaggcacacgctggcctatgacaagggatggaga
gtcagaacagactttaagcagtaccaggtgctaaagcagaatccattctggtggactcac
caacgacatgacggtaaattgtggaatctgaacaactaccgcacagacatgatccaagcc
cttggaggagtagagggaattttggagcacactcttttcaaaggaacttacttccccacc
tgggaaggtcttttctgggaaaaggccagtggctttgaagagtccatgaaatggaagaag
ctgaccaatgctcaaagatctggtctaaaccagattcccaatcgacgattcaccctgtgg
tggtctcccaccatcaacagagctaatgtgtacgttggtttccaggtgcagttggatctg
actggtatcttcatgcatggcaaaattccaacccttaagatctccctgatccagatcttc
agggctcacttgtggcagaagattcatgagagcgttgtcatggatctgtgccaggtgttt
gaccaggagctggatgctctggagattgagactgtccagaaggagaccattcatcctagg
aagtcctacaagatgaactcctcctgtgcagacattctgctgttcgcctcttacaaatgg
aacgtttcaagaccatcactgcttgcagactccaaggatgtgatggacagcaccactact
cagaagtactggattgacattcagctaagatggggtgactatgactctcacgatatcgag
agatatgccagagccaaattcctggactacaccacagacaacatgagtatctacccatct
cccactggggtgctcattgctattgatcttgcatacaatctgcacagtggttatggaaac
tggttccctggtagcaagcctctgatccagcaggccatggctaaaatcatgaaggccaat
cctgccctgtatgtgctaagggagcgcatccgcaagggtctgcagctctactcttccgag
cccactgagccctacctgtcctcacaaaattacggagagctcttctccaaccagatcatt
tggtttgttgatgacaccaatgtgtaccgagtcaccatccacaagacctttgagggcaac
ttgacaacgaaaccaatcaatggggccattttcatctttaatcctagaactggacaactc
ttcctaaagatcattcatacatctgtgtgggctggacagaagcgtctgggacagttggct
aaatggaaaactgctgaagaagtggctgctcttattcgctcactgcctgttgaagagcag
cccaagcagatcattgtgaccagaaagggcatgttggatcctcttgaggtgcacttgttg
gatttccccaacattgtaatcaaaggctctgagctgcagctgcccttccaggcttgtctg
aaagtggagaagtttggagatctgattctgaaggccaccgagcctcagatggttctgttc
aatctgtacgatgactggctgaagaccatttcctcgtacactgctttctcccgtctcatc
ttgatcctgagggcccttcatgtgaacaatgaccgtgctaaggtgatcctgaagcctgac
aagaccaccgtcacagagccacaccacatctggcccactctgaccgatgaggagtggatc
aaggtggaagtgcagcttaaagatcttatcttggctgactatggcaaaaagaacaatgtg
aatgtggcctctctgacgcagtctgagatcagggacatcatcctgggtatggagatctct
gctccctctcagcagaggcagcagattgctgagattgagaagcagactaaagagcagtct
cagcttacagccacacagacccgcactgttaacaaacatggtgatgaaatcatcacctcc
accacaagcaactacgagacgcaaaccttctcctctaagactgaatggagagtcagggca
atctctgctgccaatctgcacttacgaaccaaccacatctacgtgtcttcagatgacatt
aaagaaactggttatacttacattctccccaagaatgtgctgaagaaatttatctgcatc
tctgacttgcgagctcaaattgcaggctatctgtatggcacaagtcctccagataaccca
caggtgaaggagattcgatgtatcgtgatggtgccgcagtggggtacacatcaaactgtt
cacttgcccggtcagctgccacagcatgaatatctcaaggaaatggagccacttggttgg
atccacacgcagcccaatgaatctcctcagctgtctccccaggatgtcaccacacatgcc
aaggtcatggcagataacccatcctgggatggagagaagaccatcattatcacctgcagc
ttcacaccaggatcttgcacactgacggcttacaagctgactcctagcggatatgagtgg
ggcaggcagaacacagacaagggcaacaaccctaaaggttacctgccgtcccattacgag
agagtacagatgctgctgtctgatcgcttcctcgggttcttcatggtgcctgggcaagtc
tcctggaactacaatttcatgggtgttcgtcacgaccccaacatgaaatacgacttgcag
ctctcaaacccaaaagagttttaccatgaggtgcacagaccctctcacttcctcaacttt
gcctctctgcaggagggtgagatctacaacgctgaccgtgaggacatgtacgcttag
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integrated database retrieval system
