Trichomycterus rosablanca: 134334140
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Entry
134334140 CDS
T09921
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134334140 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134334140 (scarf1)
Membrane trafficking [BR:
trn04131
]
Endocytosis
Phagocytosis
Scavenger receptors
134334140 (scarf1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
EGF_PEAR1L
EGF_TEN
EGF_Teneurin
EGF_2
Prominin
Motif
Other DBs
NCBI-GeneID:
134334140
NCBI-ProteinID:
XP_062872401
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All DBs
Position
20:complement(7877948..7889537)
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AA seq
889 aa
AA seq
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MEVLNTVLAFLGLLYLCLPAFTQKLSATGKNVCLSPRDSSHVCCSGWAQQGDECTIPLCE
GESACTEDEQCVFPGFCRCKPGFFGFQCKTPCPPEFWGSDCKEQCPCYPYGTCNSTSGVC
KCFPTRWGSMCQNICKCGRHGHCDPLHGNCTCDEGWWSSTCTKVCQCHPSTSTCDPGTGQ
CLCKKGFWGQKCSLRCECYLSPCQQNTGECRCINGWWGPNCDRRCICDLRHSECEPLTGE
CLCQSGYRSPFCNEPCSTGYYGSGCTESCGHCEGNRSCSRQDGSCESCAPGWNGSRCDQP
CPPGYYGHKCQEKCPLCRKGETCDTMTGTCSHCEPGWTGPRCDQPCVDGTFGNDCHFLCR
PCYNGRCDHITGKCVCHPGFQGESCNSSCPDHLYGINCSSMCDCGDETCHPVTGVCPYSS
RAGFIALGLLIPLLVLLLAVLFCCCCCGSPAVGKDRVAEGDGSRTSRMKHHVYTVLANMS
LAMPCLTFWSSGLPRVTVSHHDPELTFNHSFIEPPSANWVTDSFETDEDGEAVYCVPPRE
DIPAVAGGEFQFQELSSKCNMFPEPSTFSSEDMSLAFGIPRTSSIAKSKRPSVSFAEGTK
FSSKERRGSTQENTRKAKTPWGVLMLSSLQGGQGAHEEAEAEKEETSDETNVSAEEQDAN
SLPEADTQRYSSTPSRNQQTIPGSRRPLLSNPRKNLQPQALSGGQETDTGTEKASTTIYM
TVGKPVRASKPDMSSEGPVQAMLRRLGSIQRQREEAGQPKSKGPAVAKPPRRKLGARASM
WEQASSSGQSDVVLRKPSRRKHTSLSSPCTVGATDMQQDNSAPRRPLSSILKSVPETTVQ
DSRTASEADAGYETVAASEEVSTSSEVIANNNLTVQDEEPKYENIYMKQ
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgctgaatactgtcctggcctttctgggactgctttacctctgcttgccggcc
ttcacacagaagctctcagcaaccgggaagaatgtctgtcttagtcctagggactcgtct
cacgtgtgttgttctggctgggcccagcagggtgatgagtgtacaataccactttgtgaa
ggagaatcagcctgtacagaggacgagcagtgtgtttttccaggtttctgcagatgtaaa
ccaggcttttttggattccagtgcaagactccctgtcctcctgagttctggggctccgac
tgtaaagagcagtgtccatgctacccttatggaacatgtaactctacttcaggtgtgtgc
aagtgctttcccacacgctggggcagcatgtgccagaatatttgcaaatgtggacgtcat
ggacactgtgatcccctgcatggcaactgcacttgtgatgagggctggtggagctccact
tgcaccaaggtgtgccagtgccatccttccacctccacatgtgatccgggcacaggtcag
tgcctgtgtaaaaaaggcttttggggtcagaaatgcagcttgcgctgtgaatgctatttg
tcaccatgccaacaaaacacaggtgagtgccggtgtattaacggctggtggggaccaaac
tgtgatcgccgctgcatttgtgacctaaggcatagcgagtgtgaaccgctgacaggcgag
tgtttgtgccagtctggttacagaagccccttctgcaatgagccatgcagcactggatac
tatgggagcggatgtacagagagctgtggacactgtgagggaaacaggtcatgctctagg
caagatggctcgtgtgaatcatgtgctccaggttggaatggctcaaggtgtgaccagccc
tgcccaccaggttactatgggcacaagtgccaagagaagtgtcctctctgtaggaaagga
gaaacttgtgatactatgacaggaacatgctcccactgtgaacctggctggactggacca
aggtgtgaccagccctgcgtcgacggtacttttggcaacgactgccacttcctgtgcagg
ccctgctataatgggcgctgtgatcatataacaggaaagtgtgtttgccatcctggcttt
cagggtgagagctgtaacagttcgtgtccagatcacctgtatggaatcaactgttcctca
atgtgtgactgtggggatgagacatgccaccctgtcaccggagtgtgcccctacagcagt
cgagcaggatttattgctttagggcttctgattcctctgctagttcttctattggctgtg
ttgttttgctgctgctgttgtggaagtccagctgttggaaaggatagagtggcagaagga
gatggaagcagaacaagtcggatgaagcatcatgtctacacagtgcttgccaacatgagt
ttagcaatgccctgtcttacgttctggtcatctgggcttcccagagttacagtttctcac
catgatccagaacttacttttaaccacagttttattgagcctccctctgctaactgggtc
actgactcgtttgagacagatgaggacggagaggctgtgtactgtgtccctccaagagaa
gacattccagctgtggccgggggtgaatttcagtttcaggagttaagctcaaagtgtaac
atgttccctgaaccatcaacattcagcagtgaggacatgtctctggctttcggcatccca
cgcacatccagcatcgccaagtccaagcggccctctgtctcctttgctgaaggcaccaaa
ttcagctccaaagagcgtcgtggctcaacacaggagaacactcgcaaagctaaaacccca
tggggggtcctgatgctctctagtttgcaggggggacaaggagctcatgaggaggctgag
gcagagaaggaggagaccagcgatgagacaaatgtctcagcagaggagcaagatgctaac
tcgttgcctgaagcagacactcaaaggtacagttccaccccctcaagaaatcaacaaacc
atcccaggcagcagacggcccttgctgtccaatccaagaaaaaacctacaaccacaggcc
ttatctggtggccaggagacagatacaggcacagagaaggcatccactaccatctacatg
accgtgggcaagcctgtacgggcatcaaagccagacatgagctctgaggggccggtgcag
gccatgctgcgcagactgggcagcatccagagacagagagaggaagcaggacagcccaaa
agcaaggggccagcagtggcaaagcccccacgcaggaaactgggggcacgggccagtatg
tgggaacaggcttccagttcaggacagtcagatgtagtcctgaggaagcccagccggaga
aaacacacatcgttaagttcaccttgtacagtgggggctacagacatgcagcaggacaac
agcgcccccaggagacctctttcctcaatactgaaaagtgttccggaaaccactgtgcag
gactcaaggacagcttctgaagccgacgccgggtatgagacagtggctgcatcagaagaa
gtgtccacttcatctgaagttattgctaataacaatctaacagtacaagatgaagagccc
aagtatgaaaacatttatatgaaacaatga
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