Trichomycterus rosablanca: 134334173
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Entry
134334173 CDS
T09921
Symbol
robo1
Name
(RefSeq) LOW QUALITY PROTEIN: roundabout homolog 1
KO
K06753
roundabout, axon guidance receptor 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
134334173 (robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134334173 (robo1)
Cell adhesion molecules [BR:
trn04515
]
Immunoglobulin superfamily
ROBO family
134334173 (robo1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
Ig_5
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Unc5_NetrinR_N
Ig_Rha78A_N
Ig_PDGFR_d4
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
134334173
NCBI-ProteinID:
XP_062872448
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All DBs
Position
20:complement(6354876..6642831)
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AA seq
1689 aa
AA seq
DB search
MQMAWSGATVLIIITCLWVGHRDLVESSLVLDSGTVDAAKEGVTPAPASGHNEDNTLAYT
GSRLRQEDYPPRIVEHPSDLIVSKGEPATLNCKAEGKPTPTMEWYKDGERVETDRDNSRS
HRMLLHSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVAILRDEFRQNPS
DVMVAAGEPAVMECQPPRGHPEPTISWKKDGTNVDDRDERVTIRGGKLMITNTRKSDAGK
YVCVGTNMMGERESEVAELTVLERPSFLRRPSSQSVLVEQSVEFRCEAQGDPVPTVRWKK
EDGELPKGRFEIKEDNTLKLKRLSSADAGSYTCLAENMMGKTEATAALTVHVPPLFVVRP
RNQVVGLGRTVTFQCEATGSPQPAIFWQREGSQNLLFSSQPTQFSSRFSVSQTGDLTITG
VERGDSGYYSCQALNIAGSVITKALLEVTDIISDRPPPVIRQGPTNQTVALDGTVVLGCQ
VTGTPPPTILWKKDGVLISHDSRFKILDSGALQIRFAKLGDTGMYTCVASSPSGEASRKA
YLEVQEYGIAVQPGRPTDPNLIPSPPSKPEVTDVTRTTVSLSWKPDLHSGATPTSYIIEA
FSHASGSSWQTLAEHVRMESYTLKGLKPSAVYLFLVRAANAYGLSDPSPVSDAVKTQDIL
PTSQGVEHGQIQRELGDVVIHLHNPTILSSSSIRVQWTVEQQSQYMQGYKVMYRVSSEMG
QTRSDWSLFEVKSPAEYSAVIPQLRKGTTYEFKVRPFFNEFQGTDSDIKVGKTHEEVPSA
APRGITVTQSGDNGTAILLSWQAPLEDEQNGVIQEYRIWCLGNETRYHINRTVDGNTFSV
GISGLVPGIRYGVEMAASTAAGPGVKSELTYFQLDSSGRMTQTVVDPEDTLSQQISDVVK
QPAFIAGIGAACWIILMVFSIWLYRHRKKRSGLSTSYAGIRKVPSFTFTPTVSYQRGGEA
VSSAGRPGLLNMSDSATQPWLADTWPNNCSNQNDCSINCCTSSNGNSDSNLATYSRPADC
IANYNQMDSKPSNLLVPDSGLYGDVDLSNKINEMKTFNSPNLKDGRLVGPGGQPTPYATT
QLIQSSLGTNHMGSADLNEKQSWKGSQGTPQKQQEVTLQLQYNIMEQNKLNKDHYISGDS
GMPATIPYNQMPEHNPTGSYSSSDRGSSTSGSQGQKKGVRTPKMGKQGAMNWADLLPPPP
VSPPPCQDYNLTMDDSYEAELQCPVPPSCMYLQPDELEEEEAEMERGPTPPLRGTASSPA
AVSYSHQSTATLTPSPQEEMQPMLMENLEHLNERRYPVKALFIFTVYLMLIKHMXCLIQG
KHLHFSLCFFRRQLVSPPPLSPSHTYGYISSPLALDTDGLEDEEGGDETDAEVAHVHQRH
PHILSPAQKQGAQQWLALRGLEQTPASSVCELDSSVTGSMINGWGSASEEDSASSGRSSV
VSSSDGSFFTDADFAQAVAAAAEYAGLRVGKHSGKGQTHHTGPGARKYQNLPSVHRPASP
LSTDSNISTAVPQRRPPKKQKQQAAGHYQRREPYTDDLPPPPIPPPAMLKSPTHPAKSAA
DGGRRTSSAEGRDKKLRDASDTRTSSSERRDAQERQRAQRAGKNSKQEQSAGHQHPEDIM
PYSRPSFPAIYTTRGERDPSSSSSMSSRGSGGRKRGEGVSGSRRNPTEISLNTIGAFQPG
EEQLEMVES
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgcagatggcatggtcaggggccaccgtcctcataatcatcacatgtttatgggttggt
catcgagacttagtggagagctctctggtcctagactctggcactgtggatgctgctaaa
gaaggggtcactccagcccctgcttcaggacataatgaagacaacaccttggcttacaca
ggatctcgtctgaggcaggaggactacccaccccgaattgtggagcatccttctgacctg
atcgtatccaagggcgaaccggccacccttaactgcaaggccgaggggaaacccacacct
accatggagtggtacaaggacggagagagggtggaaaccgatcgggacaactctcgttcc
catcgtatgctgcttcactccggctcgctcttcttcctgaggatagtccacggtcgtcgt
agcaagccggacgaaggctcgtatgtctgtgtggcccgcaactatttaggagaagctgtt
agccacaacgcttcgctggaagtagccattcttcgtgatgagttccggcagaaccccagt
gatgtgatggtggctgctggtgaacctgcagtgatggagtgccagccgccccgtgggcac
ccggaacccactatctcttggaaaaaagacggcacaaatgtggacgacagggatgaacgc
gtaacgatccgaggtggaaagctaatgatcaccaacaccaggaagagcgatgccgggaag
tatgtgtgtgtgggaaccaacatgatgggtgaacgggagagtgaggtcgctgagctgact
gtacttgagagaccaagttttctgcgcagaccgagcagtcagtcagtgctggtggagcag
agtgtggagtttaggtgtgaggctcagggggaccctgtacccaccgtccgctggaagaaa
gaggacggagaattacccaagggcaggtttgagattaaggaggacaacacactgaagctg
aagaggctgagctctgctgacgctggctcctacacctgtctggctgagaacatgatgggg
aagacagaggctacggctgccctcaccgtccacgtgcctccattatttgttgtgcggcca
agaaatcaggtggttggactgggacgaactgtgacttttcagtgtgaggcgacgggcagc
ccccaaccagccatcttctggcagagagaaggcagccagaacctgctgttctcctctcag
ccgacccagttctccagtcgtttttcagtctctcagacgggcgatctgaccatcactgga
gtggaacgtggtgactctggttactacagctgccaggcactcaacatagcaggcagtgtg
atcactaaagctctgctggaagtcacggacatcatttcggacaggcctccacctgttatc
cgccagggccccactaatcagacagtggcgcttgatgggacagtagttctgggatgccag
gtgacaggtaccccacctccaacaattttgtggaagaaggatggagtgctgatatctcat
gactcccgttttaagattctggactctggtgctttgcaaattcgctttgccaagcttgga
gatacagggatgtacacatgtgtagcatccagccccagtggagaggcgtcacggaaggcc
tacttggaggttcaagagtacggtattgcagtgcagcctggcagaccgaccgaccccaac
ctgattccaagcccaccatccaaacctgaagtcactgatgtcactcggaccacagtgtct
ctgtcctggaagcctgatcttcactccggagcgacccctacctcatacattattgaggcc
ttcagccatgcatcaggcagcagctggcaaacactggcagagcatgtgaggatggaaagc
tacaccctgaagggcctcaaacccagcgcagtctatcttttcctggtcagagcagcgaat
gcatatggcttgagtgacccgagccccgtcagcgatgctgttaaaactcaggacattctt
ccgactagtcagggagtggagcacggacagatccaaagggaactgggggatgttgttatt
cacctccacaatcccaccatcctctcctcatcatctattcgagtgcagtggactgtggag
cagcagtctcagtatatgcagggctataaggtgatgtaccgcgtatcctcagagatggga
cagactcggagcgactggtccttgtttgaggtcaagagtccggctgagtactcggcggtc
atcccgcagcttcgcaaaggcacgacgtatgagttcaaagtgcgtcccttctttaacgag
ttccagggaacagacagcgacattaaagtgggaaagacacatgaggaagtccctagtgcg
gcacccagaggaataaccgtaacacagagtggagacaatggcactgccatcctgctgtcc
tggcaagcacctctggaggatgagcagaacggggtgatccaggagtacagaatctggtgt
ttagggaatgagactcgctaccacatcaaccgcacagtggatggtaacaccttctcagtg
ggcatctcgggtctggttccaggaatccgctatggtgtagaaatggcggccagcaccgca
gctgggcctggagtaaagagcgagcttacttacttccagctggactcatcagggcggatg
acccagaccgttgtggacccggaggacactctgtctcagcagatatcggatgtggtaaag
cagccggcctttattgcaggcattggtgcagcatgttggatcatcctcatggtgttcagc
atctggctctaccgccatcgcaagaagaggagtggcctgagcaccagctacgccggcata
cgcaaagtgccatctttcacctttacacctactgtttcctatcaaagaggaggagaggca
gtcagcagtgccggcaggcctggtttgttgaatatgagtgactcagccacgcagccctgg
ctggcagacacatggcccaacaactgctccaaccagaatgactgcagcatcaactgctgc
acttcaagcaacggcaacagtgacagcaacctggccacctacagccggcccgctgactgc
attgccaactacaatcaaatggacagcaagcccagtaacctgctggttcctgactctggt
ctgtatggagacgttgacctctccaacaagatcaatgagatgaagacatttaacagcccc
aacctgaaagatgggaggctggtggggccgggagggcagcccacaccctacgccaccact
caactcattcaatccagcttgggcaccaaccacatgggcagcgccgacctaaacgaaaaa
caaagctggaagggcagccaagggacacctcagaaacagcaggaagtgaccttacagctg
cagtacaacattatggagcagaacaagctaaacaaggaccattacataagtggagacagt
ggcatgccagccaccatcccctataatcagatgcctgaacacaatcccactggttcctac
agcagttctgacagaggcagcagcacatctgggagtcaagggcaaaaaaaaggagtcaga
acacctaaaatgggaaagcagggtgcaatgaattgggctgatctgttgccgcctccacct
gtcagtccaccgccatgtcaggactacaaccttacaatggacgacagttatgaggctgag
ctgcagtgtcctgttcctccatcctgcatgtaccttcagcctgatgagctggaagaagag
gaggctgaaatggaaagaggccccactccaccactgcgaggtactgcctcctcccctgcc
gctgtatcgtacagccaccagtccactgccacccttacaccctccccacaggaggagatg
cagcccatgctgatggagaacctagagcaccttaatgagcgcaggtaccctgttaaagct
cttttcatctttacagtctacttgatgttaataaagcacatgtaatgcctcatacagggc
aaacatttacatttttctctatgtttctttagacggcagttggtaagccctcctcccctc
tccccgtctcacacatacggctacatctccagccctctggctctggacacggatggcctg
gaggacgaggagggaggagacgagacggatgcagaggtggcgcatgtccaccagcgacac
ccgcacatactttcccctgcacagaaacagggtgcccagcagtggctggcgctgcgggga
ctcgagcagacaccagcatccagtgtgtgtgagctagacagctctgtaaccggctccatg
atcaatggctggggttctgcctctgaggaagacagcgcatcatcgggacgttccagtgtt
gtcagctcctctgatgggtccttctttaccgacgctgacttcgctcaagctgtggctgct
gcagcagagtatgcggggctccgagttgggaagcattctgggaaagggcagacacaccac
acagggcctggcgcacgaaaataccaaaacctgccttcagtccaccgtccagcaagtcct
ctgtctacagacagtaatataagtacagctgtgccacaaagaagacctccaaagaaacag
aaacaacaggcagctgggcactaccagcgcagagagccctacacagatgatcttccacca
ccacccatcccacctccagccatgctcaagtcacccactcacccagctaagtctgcagca
gatggaggacggaggaccagctcagccgagggcagagataagaaactcagagatgcctca
gacaccaggaccagctcatcagaacgtcgagacgcacaggaaagacagagggcacagcga
gcaggaaaaaacagcaaacaagagcagagcgcaggccaccagcacccagaggacatcatg
ccctacagtcgtccctcgtttccagccatttacacgacacgaggagagagggatccgagc
tcctccagctctatgtcgtctcgagggtctggaggacgaaagagaggcgagggagtgtct
gggagccgcaggaaccccacagaaatcagcctcaacaccataggagccttccagcctgga
gaggagcaactggagatggtggagagctga
DBGET
integrated database retrieval system
