Trichomycterus rosablanca: 134334187
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Entry
134334187 CDS
T09921
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03030
DNA replication
trn03420
Nucleotide excision repair
trn03430
Mismatch repair
trn03440
Homologous recombination
trn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134334187 (rpa1)
03420 Nucleotide excision repair
134334187 (rpa1)
03430 Mismatch repair
134334187 (rpa1)
03440 Homologous recombination
134334187 (rpa1)
03460 Fanconi anemia pathway
134334187 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134334187 (rpa1)
03032 DNA replication proteins [BR:
trn03032
]
134334187 (rpa1)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134334187 (rpa1)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
134334187 (rpa1)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
134334187 (rpa1)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
134334187 (rpa1)
MMR (mismatch excision repair)
134334187 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
134334187 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
134334187
NCBI-ProteinID:
XP_062872474
LinkDB
All DBs
Position
20:14672903..14753985
Genome browser
AA seq
602 aa
AA seq
DB search
MSVKLSEGAIEALTKGTEVTNPVLQLINIRKLDSGNGPVRFRLMMSDGLHTMSSFMLATS
LNSLAEQNLVAPNCVCLLKKSVTNVLKDGRTVVIILDMEVVKPADQMPGKIGDPTAYVEG
QSKAPQSAASAPTSRPLQPQNGGTGSMNKGPARDFGKKPMTAPGTPGGTSKVVPIASLNP
YQSKWTIRARITNKSAIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDRFFSIIEQG
KVYYFSKGTLKIANKQFCSLKNDYEMTLNGESTIIPCDDSQDVPMVQCDFVSIGDLEARD
KDAIVDVIGVCKNVEDVTRITTKNSREVSKRNIQLMDMSGRVIQVTMWGKEAEAFDGTDS
PILAIKGARLSDFGGRSLSTLYSSTLMINPDIPEAYKLRGWYDKEGHALDGQSMTEMRGG
GGGGPTNWKTLADVKNEHLGHGDKADYFTCIATIVYMRKENCLYQACPSKDCNKKVVDQQ
NGMYRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQESAETLLGQKAEYVGQLKDSN
EATYDEVFQQANFHTFVFRNRVKLETYNDESRIKVTVVEAKPVDHKEYSKRLIMNIRKVA
AQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttaaactgtcggagggcgcaatagaggctctgaccaaaggtactgaagtaaca
aacccagttcttcagctgattaacatccggaagcttgattcagggaatggaccggtccgc
tttcgtctcatgatgagtgatggactgcacacaatgtcctccttcatgcttgccacatca
ctgaactctctggctgaacaaaacctcgttgctcccaactgtgtatgtttgctgaagaaa
agcgtcaccaatgtgcttaaagatggacggactgtggtcatcatactggacatggaggtg
gtaaagccggcagatcagatgccaggaaaaatcggagacccaactgcttatgtagagggt
cagtcaaaagctccacagtctgcagcaagtgcacctacttcacgtccactccaaccccag
aatggaggcactggctccatgaacaaaggccctgctcgggattttggaaagaagcccatg
accgcacccggcacaccaggcggcacctcaaaagtagtgcccatcgccagccttaatccc
taccagtcgaaatggaccattcgagcaagaatcaccaacaagagtgccattcgtacctgg
agcaactctcgaggggacggaaagctcttctccatggagcttgttgatgaaagcggtgaa
atcagagtgacaggctttaatcaggaggtcgacagattcttctccatcatcgaacaaggg
aaggtgtactacttctctaaaggaaccctgaagatcgccaacaaacagttctgctctctg
aagaacgactacgagatgaccctaaatggcgagtcaacaatcataccctgcgatgacagc
caggacgtccccatggtgcagtgcgacttcgtgtccatcggcgatctggaggcccgggat
aaggacgccatagtggatgtgattggagtgtgcaagaacgtggaggatgtgacgcgtatc
acaaccaagaacagtcgcgaggtatccaagaggaacatccagctgatggatatgtctggc
agagttatccaagtcaccatgtggggaaaagaggctgaggcattcgatggcactgacagt
cccatcttggccataaagggtgccaggctctctgattttggagggcgctctttatccacg
ctctacagcagcacactgatgattaacccagacattcctgaggcgtacaagctgagaggc
tggtatgataaggagggtcatgctctagatggacagtccatgactgaaatgaggggaggt
ggaggaggtggccccaccaactggaagaccctagcagatgtcaagaatgagcacttgggt
catggagataaggctgattacttcacctgtattgccaccattgtgtatatgcgcaaggag
aactgtctgtatcaagcctgtcctagcaaagactgcaataagaaggtggtggaccagcag
aacggcatgtaccgctgcgagaagtgcgacaaagagtttcctgacttcaaatatcgtctc
atgctctctgcaaatattgcagatttcggagataatcagtgggtgacgtgttttcaagaa
agtgccgagactcttctgggccagaaagcggaatacgtcggccagctcaaggactctaac
gaagccacctacgacgaggtcttccagcaggccaacttccacacttttgtcttccgcaat
cgagtgaagctggagacctacaatgatgaatctcggattaaagtgactgtggtggaggcc
aaacctgtggatcacaaagagtacagcaagaggctgatcatgaacatcaggaaggtggca
gcgcagtag
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