Trichomycterus rosablanca: 134334360
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Entry
134334360 CDS
T09921
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134334360 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134334360 (ndc1)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134334360 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
134334360
NCBI-ProteinID:
XP_062872699
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Position
20:857434..875502
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AA seq
671 aa
AA seq
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MFSISQNCWFVQKVVRWRSVASIAWSVLLLPPVITLLVFLIRFSLFHPIQWISESFGVLT
SLSSAFCVVLLCAATFLVGFFNLQYYSVVPSIPCSRVALLAEVLHPTQCVYSLVHCAVGM
LVMWCVCVMAGGRYQALHSPCAQNQSGGVEACLNEHHLFLLLAGAFMGYAHSLMGVVHNI
HYVSFHVIQQYKYMRFKGSLAWVVKCSAVQSLYFSRNFILLYFFFGHIPRTWMSSTLNLP
IDSSVHTLDSLAGLCDFSLLYELWISGTFLLLTWYITVLLFRIYVAEPYRFPMQSLFAEE
AEWCLPKALTETSSLVMKFLALQDLALLSQHSPSRRQEVFSLSQPGGHPHNWNAISKECV
SLLRDLTQRLVTHHDAVASSSNGRAKPPSDRSDPGSGSSVSSATSGPEDLPQTPRPSALI
RTPASVFGSAARDVGSPMTAPFTPDLGSPFPNPAVHALLGQQPVQRPWSVQSPHITRRNP
KLWSTSADSQTNGSPPASPVPGSTPPPQPQRPSLLSQWLQNRKEQVKGFLSKRGLVVYLF
NKLPEASSQALFADSQAHIWALEGLSHLVAASFSEDKYGVVQTTLPSILDSMLSLQEAVD
RHFKLPHASSKPVKSPSSFGDSSYKTLRFALRAALKTAVYRITSTFRENLNAVSVSPEHQ
KRLQQFLQFKE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgttctcaattagtcagaactgctggtttgtacagaaggtggttcggtggagatctgta
gccagtatagcctggtccgtactgctgctgcctcccgtgatcacgctcctggtgttcctc
atccgattcagtctgttccaccccatccagtggatctcagaaagcttcggagtcctgacc
tcgctgagttcggcgttctgcgtcgtcctcctgtgcgccgccacgttcctggtgggattc
ttcaacctgcagtattactcggtggttccgtccatcccgtgttccagagtggccctgctg
gcggaagtgcttcaccccacccagtgcgtttactctctggtgcactgcgcggtcggcatg
ctggtcatgtggtgcgtgtgcgtgatggccgggggtcgttatcaagctctgcactcgccc
tgcgctcagaaccagagtggcggcgtggaagcgtgtctgaacgaacatcatctcttcctc
ctgctggctggagccttcatggggtacgctcacagtctgatgggcgtggtccataacatc
cactacgtctcctttcacgtcatacagcagtacaagtacatgaggtttaaaggctccctg
gcgtgggtggtgaagtgcagcgcggttcagtccctgtacttcagcaggaacttcatcctt
ctctatttcttcttcggtcacattcccaggacgtggatgtccagcactctgaaccttccg
atcgacagttctgtacacactctggactcgctggctggactgtgtgatttctcgctgctg
tatgagctgtggatcagcgggacgttcctgctgctcacctggtacatcaccgtgctgctc
ttcaggatctacgtcgccgagccgtacaggttccccatgcagtcgttgtttgcggaggaa
gccgagtggtgcctccctaaagccctgaccgagacgagctccctggttatgaagtttctg
gctctgcaggatttggcgttgctgtcccagcattccccttcacgcagacaggaagtcttc
agcctcagtcagccaggtggacaccctcataactggaacgccatcagtaaggagtgtgtg
tcgctgctgagggatctgacccagcgcctggtcactcatcacgacgccgtggcctcctcc
tccaacggccgagccaaacctccgtccgacagaagtgaccccgggtccggctcctcggtc
agctcagccacgtccggaccggaggaccttccccagactcctcgtccaagcgctctgatc
aggaccccggcttccgtcttcggttcggccgcgagggacgtgggctcccccatgaccgcg
cctttcacgcctgacctgggcagccccttccccaaccccgccgtacatgccctgctcggg
cagcagccggtccagagaccctggtcggttcagagtcctcatatcaccaggaggaacccc
aaactctggagcacgtctgccgactctcagaccaatggaagccccccggcgtctcccgtt
cccggctccacacccccacctcaaccgcagaggcccagtctgctctcccagtggctccag
aacaggaaggaacaggtcaaaggtttcctctccaagcgggggctggtggtgtatttattc
aacaagctgcctgaagcgtcgagtcaagccctgttcgctgatagccaagctcacatctgg
gcgctggaaggactgtctcatctggtggccgcttcgttttccgaggacaagtacggagtg
gtgcagactacattacccagcatcctcgacagcatgctctcccttcaggaggctgtggac
cggcacttcaagctccctcacgcctccagtaaaccagtgaagagtcccagcagttttggc
gactcctcgtataagacgctgcgcttcgctctgagagccgctctgaaaaccgccgtctac
aggatcacctcaacgttcagagagaatctcaacgccgtctccgtttctccggagcatcag
aagcgacttcagcagttcctgcaatttaaagagtag
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