Trichomycterus rosablanca: 134334361
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Entry
134334361 CDS
T09921
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134334361 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
trn04990
]
134334361 (lrfn1)
Cell adhesion molecules [BR:
trn04515
]
Immunoglobulin superfamily
SALM family
134334361 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
trn04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
134334361 (lrfn1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
Ig_3
I-set
fn3
LRR_5
ig
Ig_2
LRR_9
Ig_DSCAM-DSCAML_C
C2-set_3
Motif
Other DBs
NCBI-GeneID:
134334361
NCBI-ProteinID:
XP_062872700
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Position
20:27089982..27142468
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AA seq
733 aa
AA seq
DB search
MERLILCMMLLGGLVRGQHCPGRCICQTISPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITAVRRKDFLNMTSLVHLTLSRNTISQIAPHAFLGMKSLRALHMDGNRLSDIRYEQMK
GLVNLRHLILGNNQIHHIDSLSFDEFTSTIEDLDLSYNNLRTLPWEAIAKMTNINTLTLD
HNLIDHIEAGTFSLLTKLVRLDMTSNRLQKLPPDRIFQHAQVLSDPKSSSSSSRLTVSFG
GNPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLIIKHLVTKPY
VMEGQGVTLKCKAMGDPEPAIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNC
VASNAAGIATAAVEINMIPLPLFVNNTGHMREADRGLSDITTSTKSANNDTRQDRRVMVN
ELTSNSAMIHWPSERHIPGIRMYQIQYNSTMDDTLVYRMIPSDSKTFRINDLAAGRDYEL
CVLAVYDDGITSLTATRVVGCVHFRTTPEVGQCQFARAQFLGGTMIIIIGGVIVASVLVF
IVILMIRYKTYGTGEGKAGAVYGHSIKQENLCETPTDTDCHAIALLSLENETREEAKAPT
SPPDSELRMTTLIPAPPPPPSRRASLGGPPSDDAQTDSSLTGSTMSLCPMGGNTGDRDRK
RAPAGIGLLPGDLARAKHRFSFDGDYMLFQSHSYPRRARARRHKSSSQLDVSPPSERRVT
FSSSTEWMLESTV
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcctcattctgtgcatgatgctgttgggaggtcttgtgagaggacagcactgc
ccgggtcggtgcatctgccagaccatttcgcccaccctgaccctgctctgcgccaagacc
ggcctcttattcgtcccgcccacgatcgaccgcaagaccgtggagctgcggctgacggac
aacttcatcacggccgtccggaggaaggacttcctgaacatgaccagtttggtgcatctt
actttatcgcgcaacaccatcagccagatcgccccccacgccttcctgggaatgaagtcc
ttgagggcgctgcacatggacggcaaccggctgagcgacatcaggtacgagcagatgaaa
ggtctggtcaaccttcggcatctcatcctggggaacaaccagatccaccacatcgattct
ttatccttcgacgagttcacgtccaccatcgaggacttggatttatcctacaacaacctg
aggactctgccgtgggaggccatcgccaagatgacgaacatcaacacgctgaccctggac
cacaacctgatcgaccacatagaagccgggaccttctcgctcctgaccaaactggtccgc
ttggacatgacgtccaaccggctgcagaagttgcctccggaccgcatcttccagcacgct
caggtgctctcggaccccaagagttcgtccagttcctcgcggttgacggtgagcttcggt
gggaaccctctccactgcaactgcgagctcctgtggctgcgcaggctgaccagagaggac
gacctggagacgtgcgcctcgcccgagcacctgatggataagtacttctggtccattcaa
gaggaggagttcatctgcgagccgccgctgatcatcaagcacctagtcaccaagccgtac
gtcatggagggtcaaggcgtcacgctcaaatgcaaagccatgggagacccggagcccgcc
atccactggcgctttcccgacgggaagctggtccacaataactcccgtaccatcctgtac
gataacggcaccctggacatcctgatcaccaccctgaaggacagcggcgccttcaactgc
gtcgcctcgaacgccgccgggatcgcgaccgccgccgtggaaatcaacatgatcccgttg
ccgttgtttgtcaacaacaccggtcacatgagggaggccgatcgcggtctctcggacatc
accacctccaccaaatccgccaacaacgacacccggcaggacaggagggtcatggtcaac
gagctgacctccaattcagccatgatccactggccctcggagcgacacattcccggaatc
aggatgtaccagatccagtacaacagcaccatggacgacaccctggtctacaggatgatc
ccctcagacagcaaaaccttccggattaacgacctggcggcgggacgcgattacgagctg
tgcgtcctggccgtgtacgacgacggcatcacgtccctcaccgccacccgtgtggtgggc
tgcgtccacttccgcaccacgcccgaggtgggtcagtgccagttcgcccgggctcagttc
ctgggcggcaccatgatcatcatcatcggcggcgtcatcgtggcgtccgtgctcgtcttc
atcgtcatcctgatgatccgctacaaaacgtacggcaccggcgaggggaaagcgggcgcc
gtttacgggcactcgatcaagcaggagaatttgtgcgagaccccgaccgacaccgactgc
cacgccatcgcgctcctgagcctggagaacgagacacgggaggaagccaaggcgccgacg
tctccgccggactctgagctgcgcatgacgaccctgatccccgccccgccgccacccccg
tcccgccgggcaagcctgggcggcccgccgtccgacgacgcccagacggacagcagcttg
accggctcgaccatgtcgctgtgcccgatgggtggcaacacgggcgacagggacaggaaa
cgagcgccggcgggcatcgggttgctgcccggcgatttggcccgggcgaagcaccgcttc
tcgttcgacggggactacatgctttttcagagccacagctacccgagacgggcgcgcgcc
cgccgccacaagtccagctcgcagctcgatgtgtcgccgccgtccgagcggcgcgtaacg
ttcagcagcagcacggagtggatgctcgagagcaccgtgtga
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