Trichomycterus rosablanca: 134334860
Help
Entry
134334860 CDS
T09921
Symbol
dchs1a
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16
KO
K16507
protocadherin-16/23
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134334860 (dchs1a)
Cell adhesion molecules [BR:
trn04515
]
Cadherins
Cadherin related
134334860 (dchs1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_pro
RIFIN
ASFV_J13L
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
134334860
NCBI-ProteinID:
XP_062873397
LinkDB
All DBs
Position
20:3935543..4071562
Genome browser
AA seq
3235 aa
AA seq
DB search
MVPGTLELQLDEEQPAGTVIGDISAGLPPGITASLYFISDHEGTGVGSDLDIDESTGIIR
TAKVLDREVRDRYNFIAVTMTGVTVDVTVIVNDINDHRPAFPRQRASFRIPEQTTIGTKF
PLEPALDADQGQFTTQGYIITEGNDGQAFLLETRRGSNQVLYLDLVVNAILDREKRSSYT
LSLEAFDGGTPKKTGRMILDVTVQDVNDNAPVFNQSRYHAIISENLQPGTNVLQVFASDA
DEDNNGLVIYDINRRQSDPERCFAINSQTGVITVNKPLDYEMKRVHELVVQARDNATQPE
VTNAFVTIHVRDYNDNQPTMTIIFLSEDGLPRISEGAQPGQYVARISVTDPDYGEYANVN
VSLEGGDGKFGLTTKDNVIYLICVDKILDREEQDHYELRVMATDSGTPPLHAESSFTIQV
TDVNDNPPLFDQPEYTQVIPEVVFPGSFVLQVTARDEDQGPNGEVQYSIRHNLKTHSDWF
SIDAMTGIITTLTQLDYETDPTPSLIVVASDRGRPPLSSTAVIRVILQDTNDNEPVFGSK
FYNASIKENTAAGTCFMEVTARDADGGTFGSVSYSFGSGPGSSTPSQFTINKETGQICTT
VSLDRDQGPASYDFTVTAMDGGGLNSVAYVHVDLVDVNDNRPTFYPVHYSVSLSTQSMPG
TSVVRVTAHDPDAGENGRVTYRTAPGGSSPLFTLNKDTGVISLSRSLHVKANSVIAMVVS
AQDGGGLAATVNARVNISIVAGQVAPPVFEQVQYYFTVSEDALRGTQVGTVRASTKDGVS
KDVSYTICSGDPTGYFTVDPETGVLRTSLPLDHEVQPVVDLEIQAQSGNPPAFGQTRVQI
TVADVNDNAPIFHPSSSESLILLGDTRMGTVIYKIQAEDPDSGVNGALTFDLISSSAQRT
FSVDRNSGEIRLIGSLSYETVPRYDLQVLAKDMGAPQLSATFTLVVHVQAENSQGPVFET
LTYRVELKEGTPLNTRFLQVRALNREAGITSGSSAAVPLAYHLQPDGDAAGFGVVSDSGW
LFVKTALDREIKEVYLLTVLATSGQGQLKKTGSATVRVSVTDENDNSPRFTQERAFLAVR
ENLPAGTGFGRVPATDRDAGLNGRLTYRLLHPDRNFQINSHTGEISTRLALDREHQSSFQ
LVVVVQDNGTPPRSATGTVFITVLDENDNAPSFTRSQPGKDLLMQVMEGQPSGILLGIVI
AKDSDEGENGTVFYSMSGPRAERFSLHPITGELHSSSPLSHADRPEYTFTILATDRGSPP
RSSTATLRIQVLSSSKVSTTTNLVSVSLNPIEGAKPGSVIGSVRSSDSRSLPESGLVTYT
VVGGSDRDGTFVVDRQTGDVYLACELDYERAPHFTLQIEVDDFSAPLPKSHFVTLEIDVQ
DSNDHSPQFPEDPVTIVVPENLEPESVIYTFQAFDKDGSGPNSELTYSIIQQWPSSADLL
LLNPKTGILSLGQTLDHETSTSILLVVQATDSALDVSKRRQGTVTARIFITDVNDNAPVF
TSPTVVSVMEDQSMGFVLLYVMAQDPDQGENGRITYSIQSGNAEGKFSINPNTGSLSILK
PIDCEVQAQYNITVVAEDHGVPPQSTVQQLTVQVIDVNDEAPTFDESVYEAFITENQLAG
ATVLVVSATDLDQGSNGMVAYGGLTDDIFSIHPVTGVISTTKSLDRETQEVYTVTVYAKD
GGFPSNFAKATVRITVLDENDNRPEFGRVYYSLEVPENQEPVTLFTLRATDLDSGASGLV
QYRIIDGDSLGDFYLDKNSGLLSTSRALDREKKSRYTLTVEARDLGTPSLSSTATLDVSI
LDLNDNSPVFTGSTYTVEIAEDASEGSLVLEVTATDLDEGSNGQVIYFLSQESKGMFMVD
QHTGRIITAATLDREKIASYSFQVYAMDVSPSNPRNSSVQVSVHVLDVNDNAPFFITDPL
IINVSSNSFASHRVLATMRAEDKDFGANGSVFYRFANPVKGFTINSLTGDIQATERLHGL
TQSQRTLIVQAMDQGSSAQSSLGVVVVYVREQSYTGIRFSRNSRDVSLQENAAKGTSVVQ
IQAQYPDGSRSGISYSIFSGNKLQTFSISSYTGTITVXIRSSKGLDFEETPRLRLVIKAE
TASSSSFMAVNLILQDVNDNLPRFQLHNYVAYVREAQGYDFPIIQVLADDVDQGQNGQVT
YSIRSSSMSGLFKIDPLSGSISTAAIMDREIWIQTKLVIMATDRGSPRLAGSATLTVIIV
DTNDNRPTIPLPLEVRVPENTLIGTVITQVTGNDVDSGPALSYSLHLDPETHRKFGIHRY
GGGVSLTGELNYEERTWYTMTVRTSDSVHQSEANLTVLVEDVNDNSPVFTQDLYQVTLAE
HSPAGSSVITVTATDQDSGENGKITYSVVSRKDMFYIDQNNGTLFIKQRVEFDSERPSFL
VIIEARDGGTPTLTGFTTVQVHVSDINDNAPVFQQTEYRAAVSEDELPGSTVLTLEAVDA
DLSRDNCGFDFSIASGNIGNAFQIESSIRFLEGHGFQIVGTLILAEKLDFEAVQAYNLTI
VASDRGIPQRSSSVPVLITVVDTNDNPPAFNRAEYNVVLSEGAETGMEVLQLSALDPDST
PNGEVQYSIVSGDESELFSLDQRTGALRLRRSLDNEQESSHILIVQASDAQGHFALAPVT
IEIKDINDNRPFFPLKTLTASIRENQPQNTLVTILHAIDHDAGAFGQLKYYIMDKSGSGK
ESFLVNQTSGEVQTCSSFDFEKMNAFHFVAVAMDAGNYSATTTVQVYVTGEDEYDPVFTS
LKFAFHVPEGAKKGQSIGQVIAKDEDGGIDGIVLYSLANSSPYFEVNISTGAILLKMDAY
GQYTGRSKRETREMTLDVVAHSPLESSRVATAQVIVDITHTTFGLTTDVNMLLASVIAAS
LAAIVVLIIIAVLLYLLRSRRKKYEENRDDILSPGTILDTLDEPTVHGADKLYYQTLPGY
AEDQSANEGVSYTRGGSLDPSHSSGRGSAEAEAAEDDEIRMINEYPRVSSISSSMQEHIS
ARGPDSGIQQDADQLSDISGEPGMDANQWFKAKKMGSLGGTLLPGQTAVYRDDGGGYLAV
GRGLNISQTKDYTFPEDGKPMVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFT
EIARLKDENAVADPKPRIDPPPLITSVAHPGAKTVLPKPAVGRTLPHVSTLKRSPISHDG
SVSSIAMSPRFSPSLSPLAARSPAISPYGVNQGPPSSVISTDHSIEHSEETELRF
NT seq
9708 nt
NT seq
+upstream
nt +downstream
nt
atggtgccaggtacgctggagctgcagctagacgaagagcagccagcgggtacggtgatc
ggggacataagtgccggcctgccgccgggcatcacggcatcgctttacttcatctctgac
catgagggaacaggtgtcggttcagacctggatattgatgaaagcacaggcatcataaga
acagcgaaggttttggaccgggaagtacgagaccgctacaattttatcgcagtgaccatg
actggtgtgacggtggacgtgactgttatagtcaatgacattaatgaccaccggccagcc
ttccccaggcagcgggcttccttcaggatccctgaacagaccaccatcggaactaaattt
cctctcgaacctgccttagatgccgaccagggacagttcacgactcaaggctacatcata
acagaggggaacgatggtcaggcttttcttcttgaaacaagacgaggctcaaatcaagtg
ctctacctggacttggtagtcaatgccattttggacagggaaaagaggtcatcctatacc
ctctccttggaggcttttgatggcggaactccaaaaaagacaggacggatgattctggat
gtgaccgttcaggatgttaatgataatgcgccggtgtttaaccagagccggtaccacgct
ataatctctgaaaacctgcagccaggaaccaacgtacttcaggtctttgcttcggatgct
gatgaggacaacaatggccttgtgatctatgatattaacagaagacaaagtgaccctgag
agatgttttgccatcaattctcagactggtgtaataactgtcaacaagcccttggactat
gagatgaaaagagtccatgagctggtcgtccaggcacgggacaatgccactcaacctgag
gtcaccaatgccttcgttactatacacgtcagggattacaatgacaaccagcccactatg
accatcatttttttgagcgaagatggcttaccacgcatatccgaaggtgcccagcctggc
cagtatgtagcacggatctcggttacagaccctgattatggagaatacgctaacgttaat
gtgtcgttagagggtggagatgggaaattcggtctgaccactaaggacaacgtcatctat
ctaatatgtgtagacaagattctggatcgtgaggaacaggaccattatgaactaagggtc
atggctaccgactctggaacccctcccttacatgccgagtcttcgtttaccatccaggtc
acggatgttaacgataaccctcctttgttcgaccaaccggagtacacccaggtgatcccg
gaagtcgtctttccagggagtttcgtgcttcaggttacagcacgggacgaagaccaggga
ccgaacggtgaggtccagtatagcattaggcacaatctgaagactcattctgactggttc
agcatagatgccatgactggcatcatcactacccttacccagctggattacgagacggac
cctactcctagtttgattgtggtggcttcagacaggggtagacctcctctgtcctccact
gctgtgatcagagtcatcctgcaggatactaacgacaacgagccagttttcgggagcaag
ttctacaacgcttcgattaaagagaacactgctgccgggacttgcttcatggaggtaaca
gcgagagatgcagacggaggaaccttcggctctgtgtcttactctttcggctccgggcct
ggcagctcaaccccatcccagtttaccatcaacaaagaaactggacaaatctgcacaact
gttagtctggaccgtgaccagggacctgccagctacgactttactgttactgccatggat
gggggtggccttaactctgtggcttacgtacacgtggacctggtggacgttaacgataac
cggccgacgttctaccccgtgcactattccgtgagtctgagcactcagagcatgcccggt
acgtctgtggtccgggtgacggcccatgatcccgacgcgggggagaacggcagggtgact
taccgcaccgcgcccgggggcagctcgcccctctttaccctgaataaagacactggagtg
atttctttatcacgctcgttgcacgtgaaggcaaactccgtcatcgccatggtggtctcg
gctcaggacggcggcggcctcgctgccacggttaacgccagggtgaacatcagcatcgta
gcaggccaggtagcgcctccggtgtttgaacaggttcagtactactttactgtgtctgag
gacgccctgcgtggaacccaagtgggcactgtgcgtgccagcaccaaggatggcgtctca
aaagatgtttcttacaccatctgctctggtgacccgactggttacttcactgtagatcct
gagaccggagttttgcgtaccagccttcctttggatcatgaggtccaacctgttgtcgat
ctggagattcaggcacaaagtgggaatcctccagcgtttgggcaaacccgcgtccagatc
acggtcgctgacgtaaatgacaacgctccgatcttccacccatcatcttctgaatctctg
attcttttgggagacacgagaatgggaacggtgatatacaagatccaggccgaggaccca
gactctggggtcaacggtgctctgaccttcgacctgatctccagcagcgcccagagaacc
tttagtgtagaccggaacagtggtgaaattcgtctcattggcagcttgtcttatgaaacg
gtacctcgttatgacctgcaggtcctcgctaaggacatgggggccccccagttgagtgcc
acctttaccctggtggtccacgtgcaagctgagaacagccaaggccccgtgtttgagacc
ctcacctatcgcgtggagctaaaggagggcaccccgctgaacacccgtttcctacaggtg
cgtgccctcaaccgagaagctggcatcacttcggggtccagcgctgccgtccctcttgct
taccacctgcagccagacggagacgcggcaggcttcggcgtcgtttcagacagtggctgg
ctcttcgtgaagaccgccctggaccgcgagatcaaagaggtgtacctgctcacagtgctt
gctacgtccgggcagggtcagctgaagaagacgggcagcgccactgtacgtgtctcggtc
acggacgagaacgacaactcgccccgcttcacccaggagagggcgtttctggccgtgagg
gagaacctgcctgctgggacggggttcggacgcgtgcctgccaccgacagagatgctggt
ctcaacggtcgactcacctaccgccttctgcaccctgatcgcaactttcagatcaactcg
cacacaggagagatcagcactaggttagcactggatcgggagcatcagtccagcttccag
ctggtggtggtggtgcaggataacggaacccctccgcgcagcgctactggaaccgttttt
atcacggtgctggatgagaatgacaacgccccctccttcacccgctcacagccgggcaaa
gatctgctcatgcaggtgatggagggacagccgtcaggtattttactaggcattgtgatc
gccaaagactcagatgaaggagaaaatgggactgttttctactcaatgtcaggtcccaga
gcagagcgcttctctcttcaccccatcactggtgagctgcactcgtcgtcccctctgagc
cacgctgacagacctgaatacacttttaccatcctggctacagaccgtgggtcgcctccc
cgcagctccacggccactctgagaatacaggtgctcagctccagtaaagtatcaaccacc
accaacctggtctctgtctcactgaacccaatcgagggtgcgaagccgggctcagtcatc
ggttctgtgcgctcatctgacagtcggtctctccctgaatctggtctggtcacctacaca
gtcgtaggtggttcagatcgggacgggacgtttgtagtagaccgtcagaccggagacgtc
tatttggcctgtgagctcgactatgaacgcgctcctcactttaccctgcagattgaggtg
gatgatttttctgcaccacttcccaaaagccattttgtaacactggaaatcgatgtgcag
gacagtaatgaccattcaccccagtttcctgaggacccggtcaccattgttgtgcctgag
aatttggagcctgaatctgtgatctacacgtttcaggcgtttgataaggatgggagcggt
ccgaacagcgagctgacctactccataatccagcagtggcccagcagtgcagatcttctt
ctgctgaacccaaagactggaattttgtcactaggtcaaaccctggaccatgagacttct
acctctatccttctggtggtccaagcaactgattcagcccttgatgtcagtaagagaaga
cagggaactgtgacagcccggatcttcattacagatgtgaatgacaatgcacccgtgttt
acctcacctaccgtggtcagcgttatggaggaccagtcgatggggtttgtgctgctgtat
gtcatggctcaggatccagaccagggtgagaacggtcggataacgtacagcatacagagt
ggcaacgctgagggcaagttcagcataaatcctaatactggctctctctccatcctgaag
ccgattgattgtgaagtccaggcccagtacaacataaccgtcgtagcagaggaccacggt
gtgcctccccagtccaccgtccagcagctcactgtgcaggtcatcgatgtaaacgatgaa
gcgcccaccttcgacgagagcgtttatgaagccttcataacggagaatcagcttgcagga
gccactgtgctggttgtgtcggctacggatttggaccaagggagcaatggcatggtggca
tacggaggcctgacggatgatattttcagcatccatccagtgaccggtgtcatatcgacc
actaaatctctggacagggagacccaggaggtttacactgtgacagtttatgctaaggac
ggcggtttcccgtctaattttgccaaggctacagtgcgtatcacagtgttggacgagaat
gacaacaggccagagtttggcagggtgtattacagtctggaggtgccagagaaccaggag
cccgtgaccctgtttactctcagagcaactgacctggactcaggggcaagtggacttgtg
cagtacaggattattgacggagactctttaggcgacttttacttggacaagaactcaggc
ctgctgtccacctccagagctctggacagagagaagaaatcccgttatacccttacagta
gaggctcgagacctaggaactccttccctgagcagcaccgccactctggacgttagtatc
ctggacctgaacgacaacagtccagtcttcaccggcagcacgtacactgtggagattgct
gaagatgcttctgaaggttctttagttctggaagtcacagccactgacctggacgagggc
tctaatggtcaggtgatctacttcctcagccaggagtctaagggcatgtttatggttgac
cagcatactggtcgcatcatcacagctgcaacactggaccgagagaaaattgcatcctac
agcttccaggtttacgccatggacgtctctcctagcaaccctcgcaattcctccgttcag
gtcagcgtccacgttctcgatgtgaatgataacgcaccctttttcatcacagatccgctc
atcatcaatgtgtccagcaacagctttgccagccaccgcgtcttagccaccatgagagcc
gaggacaaggactttggtgcgaatggatctgtgttctaccggtttgccaatccggtaaaa
ggcttcactataaactcgctgaccggagacattcaggcaactgagagactccacggtctg
actcagagccagcggacactcatagtccaggccatggaccagggaagttcagcgcagtcg
tcgttaggcgtggtggtggtctacgtccgtgagcagagctacactggaatccgcttcagt
cgaaactccagggacgtcagcctacaagaaaacgctgccaaaggcacgtcggtggtgcag
atccaggctcagtatcctgacggctcccgcagcggcatcagctacagcatttttagtggc
aacaagctgcagactttcagcatcagctcctatactggtacgattacagtttaaatcagg
agctccaaggggttagactttgaggagacccctcgtctccgcctagtgatcaaggctgaa
acggcctcctccagctccttcatggctgtaaacctaatccttcaggatgtcaacgacaac
ttaccacgcttccagctccataattacgttgcttatgtacgggaggcccagggatacgat
ttccccatcattcaggttctggcagacgacgtcgaccagggtcagaatggccaggtgacc
tactcgatcaggtcgtcttccatgagcggcctgttcaagatcgacccgctcagcggcagc
atctccaccgctgccatcatggacagagaaatctggatacagactaagttggtcatcatg
gcgacggaccggggcagtcctcgtctggcaggctccgccactctgactgtgatcatagtg
gatacgaacgacaaccggcccacgattccgcttcctctcgaagtgcgagttcctgagaac
acactgatcggcacagtgatcacccaagtgacgggcaatgatgtggactccggtcctgct
ctctcgtactccctgcacctggacccggaaacccacaggaagtttgggatacatcggtat
ggaggaggggtgtctctgaccggagagctgaattatgaggagaggacgtggtacaccatg
accgttcgcacgtccgactctgtacaccagagcgaagccaatctgactgtactggttgag
gacgtgaatgataactccccagtcttcactcaggacctttatcaggtgacgctcgctgaa
cactctccagccggcagttctgttataactgtgacagcgactgaccaggactctggagaa
aatggcaagattacatacagtgttgtgtcaaggaaagacatgttctacattgaccaaaat
aacggcactcttttcatcaaacaaagggtagagtttgattcagagcgaccatccttcctg
gtgataatcgaggctcgtgatggtggaactccaacactgactggttttaccacagtgcaa
gtacacgtgtctgacatcaacgataatgcccctgtgttccaacaaacagaatacagagcg
gctgtgtcagaggacgagctccctggatccactgtcctcaccctggaggctgtggacgca
gacctgtctagggacaactgtggatttgacttctccattgccagtggaaacattggcaat
gcctttcaaatagagagtagcatacgcttcctagagggtcatggatttcagatagttgga
accttaatcttagctgagaagcttgattttgaagctgtacaagcctataatcttacaatt
gtggcttcagaccgtggaatcccccaacgaagctcaagcgttcctgttctaatcacagta
gtagataccaacgacaacccaccagccttcaacagggcggagtacaatgttgtcctcagt
gaaggtgccgagacaggaatggaagtacttcagttatcagcactagatccggattctaca
ccaaatggagaggtgcagtactcaatcgtgtctggagatgaaagtgagctcttctcatta
gaccagcgtactggcgctcttcgtctgcggaggtcattggacaacgagcaggagtcatct
cacatactcatcgtgcaagcctcagatgcccagggacactttgctcttgctcctgttaca
atagagatcaaggacatcaatgataatcgacctttcttccctcttaaaacactgacggcg
agcattcgtgagaaccagcctcagaatactctagtcaccatcctgcatgccatcgatcat
gatgctggggcattcggtcagctaaaatattacattatggataaatcagggagtggcaaa
gagtcattcctggtcaaccagacctctggtgaggttcagacctgctccagttttgacttt
gagaagatgaatgcattccattttgttgccgtggcaatggatgcgggtaactactctgca
accactacggttcaagtctatgtgactggcgaagatgagtatgaccctgtttttacgagt
ttaaagtttgccttccatgtccccgagggagcaaagaaagggcaaagcatcggccaagtg
attgcgaaagatgaggacggtggtatagatgggattgttctctacagccttgcgaacagc
tcaccttactttgaggtcaacatctctacaggagcgattttgctaaagatggatgcttat
ggacagtacaccggtcgatctaagagagagacccgtgaaatgactctagatgtagtagcc
catagtccgttggagagttcacgagtagccactgctcaggttatcgtggatatcactcat
acgacctttggtctaactacagatgtgaatatgctgctagcaagtgtcattgctgcatcc
ttagcagctatagtggtcctgattattattgctgtattgctctacctgttgagatccaga
cgaaagaagtatgaagagaaccgtgatgatattttaagccctggcacaatcctagacact
ctcgatgaacccactgtccatggagctgacaaactttattaccagactcttcctggatat
gccgaagaccagagtgctaatgaaggagtttcttacactcgaggtgggtctctggacccc
tctcactctagtggaagaggatcggcggaggcagaagcggctgaggatgatgaaattcgc
atgattaacgagtatccacgagtctctagcatttcctcctccatgcaggagcacatatca
gcacgtggacctgactctggaattcagcaagacgcagatcagctctcggacatctcaggt
gagcctggaatggatgcaaaccagtggttcaaagccaaaaagatgggaagcctgggtgga
actctgctgccagggcagacagcagtgtatcgggatgatggtggtgggtacctcgcggta
ggacgtgggcttaacatctcgcaaactaaagactatactttcccagaggatgggaagccc
atggtggatggatctcttacagccatcgttgctagtgatgaggaactgagaggcagctac
aactgggactacctccttaactggtgcccacagtttcagccactggctaatgtatttaca
gaaattgccaggctcaaggacgagaatgccgtggcagatccgaagccaagaattgacccc
cctcctcttatcacatctgttgctcatcctggggctaaaactgtccttccaaaacctgct
gttggacgaactcttccacatgtttcaacattaaagcgatccccaattagccacgatggc
tctgtttcttcaatagccatgtcgcccaggttttcaccctccctgtccccactagctgca
cgttcgccagccatctccccctatggtgtcaaccagggaccaccttcctctgttattagt
actgaccactccatagagcacagcgaggagacagagcttagattttaa
DBGET
integrated database retrieval system
