Trichomycterus rosablanca: 134334861
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Entry
134334861 CDS
T09921
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
trn
Trichomycterus rosablanca
Pathway
trn04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134334861 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
trn04091
]
134334861 (frem2b)
Lectins [BR:
trn04091
]
C-Type lectins
Lecticans
134334861 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
Tweety
Motif
Other DBs
NCBI-GeneID:
134334861
NCBI-ProteinID:
XP_062873398
LinkDB
All DBs
Position
20:complement(4224971..4325712)
Genome browser
AA seq
3117 aa
AA seq
DB search
MAQCKPKTGRISVLLCLLYLVFTLLEVSHAGGFDSLGLTYGLRSDLSEDAILVANNGIRV
PFGRSVFIDPINDLVLQVRPGDKCTITVLDNDPLSQKPGQLSPKKFPCEFGPSDVKYSHF
GSRSPSKDRVRLQLSYDSQTDTVIIPFMMEVEVIFTQLEILTKNMPLTVEKLLEISNPID
KKILEFTYDRNLYQCKVTSLAGAGVLPRYGKLVDDGKLGKMVDCDEFTRLNVRYRHTFTQ
RSPNRDYVPMFVELQDKEGNVLKQEFFQIMVRIKEGEENTAPKPSFVAMMMMEVDQFVMT
AITPDMLDAEDVESAPDDLIFNITSPLSFEEGYIVSTDDRNLPITSFYQSDLRDLKIAYK
PPSEDSNSERLFQIEFVVVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLYEGQSRP
LFTLQNLQISDEDNLNDVKVTVIDGLRHGELTVIGSRNKFFTPADLDQGAVIYQHDGSDT
YSDNIIFRMTDGKHEVEFLFPITVVPTDDEPPIINANTGLVLLKNQMMPITTSMLSAADI
DSEDSTIRFIIEAPFSTIGEVLLRQSDAPEDPSTWKFNSEDEMYEKAVTEWLQQDITDGK
LFYRHIGPHNTQAITDQFVFRVQDDNDPPNQSGENVFIIKILPVDDIPPEIYPGTTLQLT
VHEYQLTVFRKKFLRYTDLDSEDRDLKYTITQPPTDTDENSPGILGAIVLTESQNTEVTE
FTQAQINHHKISYKPPDLELGITPHVVQFNYTVEDMAGNSVSGVFTIFLQPVDNKPPQIT
NTGFTVLERGAHVITGSELNTMDPDTDSTKITFTLTQPPQHGQILDTFNPLSKGDSFNSD
DIAHGRIAFVHNGDELTNDFFQIDVSDGVHVVPITVKINVKLIDDETPTINLPEGTIGSY
IDVLENGATAMTANVIQGRDEDTDDLRLTYIVEDPPVFGEILVNGVPSRRFTQADIISGL
VVYTHISGEIGLATKEDFFNLTLTDMSDEWTFGGNKIKGVRVHVTILPIDSQAPKVFVGN
QFSVVEGEKNIIQIAHISASDIDTPNDDLLCTIIVQPTAGYVENISPAPGSEKSRSGTAI
SAFTIKDIKQNHIYYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPIVIIPSNDEKPEI
HMREFVVMEGMNVVIDTPILNGVDADVPTDELTFIITKPPKHGFIINQLTSGTVPVTNFT
LDQIREASSIVYEHDDSETTEDSFKVLLTDGKFTVEKTVIVLVIPVDDETPRMAINDGLE
IEIGEVKDITNKVLKATDLDSEDSTLTYIIRYGPNQGILQKRMPFGTLQNITIGMNFTQS
EVDQNFIIYIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDVVFPDVVSKGVFLKE
GGRVTLTTDLLSTSDLNSPDEHLVFTITRAPMRGHLECTDSLGMPITSFTQLQLAGSKVY
YIHTSDDEVKMDSFEFEVTDGYNPVFRTFRISITDVDNKKPVVTIHGLVVNEGKSRLITP
FELTVEDRDTVDRLLKFTITQLPIHGKLLFNNTRPTTSFTKQDINENLISYKHDGTESAS
DSFSFTVTDGTHTDFYIFPDTVFETRKPQRMKITILSVDNGVPQIVVNKGGTALKMLPTG
HLGFVITSKALKAEDRDSPHGAVTFKVTVGAEHGYLIDLGKGNATITTFTQADINDMHIC
YVLRNKNNATSDSFYFSIEDNGGNKLKNQQFRLTWAWISLEKEYYMVDEEAKVLEVVLKR
RGYLGETSFVSIGTKDGTAEKDKDFRGKAQKQVQFNPGQTSATWKVRILTDNLYEQSETF
QIFLSEPVMGALEFPQSATVEIIDPADESTVFIPAATYLVEEDIGELLIPVRRSGDVSQE
LMVICFTQQGSATGTVPTTVLSYSDYISRPEEHTSVLRFDRDETEKPCRVVIIDDSLYEP
EESFNVTLSMPMGGRLGQVFSTTRITVLPDSDDAPVFYFGEIEYHVDESDGFVEVRVWRT
GSDLSKTGTVTVRSRKTDPFSAEAGEDYVGISKNLDFTPGVTMQTVRVTILDDLGKPVLE
GPEKFELVLRMPMNGILGEPGKTTILINDSVSDLPKVQFRDTVYTGNENDGQITAIIYRS
GDVRYKSTVRCYSRQGSAQVMMDFNERPNTDASIITFLPGEVEKPCTLVLVDDTEHEEVE
ELRLVLGSPKSESPFGASIGAQNETLVKIKDDADKAIIKFKLTKFSISEPGEAGQVSVVK
VPVLRVGDTSKVSVVRVHTKDGSATSGEDYHPISQDVQFKEGETEHTVEIEILYDGVREM
REAFTVHLKPDENMVAEIQMTKAIVYIEEGNSMADVTFPAVPVVISLLQYDDSVSARNTQ
PAAGYPVICVTACNPKYPDFERTGSICAGEHINNTLTRYRWLVSAPAGPDGVTSPMREVD
FDTFFTSSKRITLDSVYFQAGSRVQCAARAVNSGGEEGLELSSAIVSVSVEEGLCQPRVL
GAVGAEPFSAKLRYTGPDDSEHPNLIKLIVTMPHIDGMLPVVSTRPLSNFELTLSPDGTR
VGNHRCSNLLDYSEVRTRHGFLTEATRNPEAIGGTAPYQYSSTLRGESTLRFYRNLHLEA
CLWEFVSYYDMSELLSDCGGTIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGVGGWQHF
DLQSELRLTFVYDTAILWRDGVGSPPEAELQGALYPTSMRINEQGRLVVNFRTEARFRGL
FVMSHPASSLTSMIMCMDHPGLTFNLSLVRSEPTYNQPMQQWTFISDFAVRDYSGTYTVK
LLSCTAPPNLDYTLPPVCNPREPVTFDLDIRFQQVSDPVAAEFSLNTQMLLLSKRTLWLS
DGSMGFGQESDTAFSEGDIIYGRVMVDLVQNLGDSFICNIEKVFLCTGADGYVPKYNPDN
FEYGCLADAPSLLYRFKIIDKAQPETQARTFGSINFNAFLAVDDTGALALVRQPGSDGFR
LDSAPLFQVSSGREWYIHTIYTVRSRDNANRGIGKRSVEYHHISEPQHAIQSHSRSRRST
GGVPPLAKDIGAENERGTNILHIALERSGARQHRPDVNIQKVVVTTGSKPNDTGDDQVIM
IVGTLVGVLLSVILLVLVVLLVRSRKDKEKVTESPKSSTSTEPMMTRGCDSNDSSEV
NT seq
9354 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtgcaagcctaaaacaggacgtatttctgttttactttgtttactgtacctg
gtttttaccctgctggaggtttcccatgcgggcggatttgacagtttggggctgacctat
ggtctcaggtcggacttatccgaggacgccattctggtggccaacaatggaatccgggtt
ccttttgggagatctgtttttattgaccctattaacgatctggtccttcaggttcgacca
ggagacaagtgcaccatcacagttttggacaatgacccgctgtctcagaaaccgggtcag
ctgagccccaaaaagtttccgtgtgagtttggacccagtgatgtaaagtactcgcatttt
ggctctcggagcccctccaaagacagagtaagactccagctgagttatgactcccagact
gacacagtaatcatcccgttcatgatggaagtggaggtgatcttcacccagctggagatt
ctgactaaaaacatgcctctgactgtcgagaaacttctagaaattagcaatcccatcgat
aagaagattctggagttcacttatgatcgaaatctgtatcaatgcaaagtaacatctctt
gcaggtgctggtgtcctgcccaggtatggaaaactggttgatgatggtaaactgggcaaa
atggttgactgtgatgaattcaccaggctgaatgttcgttatcgccatacgttcacacag
cgctctcctaatcgtgattacgtcccaatgtttgttgagcttcaagacaaagaaggtaac
gtcctaaagcaggagttctttcaaattatggtgcggatcaaagagggcgaggaaaacaca
gctcccaaacctagttttgtagccatgatgatgatggaagttgaccagtttgtgatgacc
gcaataacccctgacatgctagatgcggaggatgttgaatccgctcccgatgacttaatc
tttaacatcacatctcctttgtcatttgaggagggatatattgttagcacagatgacagg
aatctacccattacatccttttatcagagtgatctcagggatcttaaaatagcctataag
cctccgtcggaggactcaaattcggagagacttttccaaatcgagtttgtagtcgtggac
acagagggagctgtctccgacccatttgctttcatgattgtagttaagcccatgaacact
ttagcacctgttgtgacacgaaacacaggacagctgctctacgagggccagtctagacca
cttttcactttacaaaacctccagattagtgatgaggacaacttaaatgatgtaaaagtg
actgtgattgatgggctgaggcatggtgaacttacagtgattggatcaaggaataaattc
tttacacctgctgatctggatcaaggtgctgtgatctaccagcatgacggcagcgataca
tacagcgataatataattttccgcatgacagatgggaaacatgaagtggaattccttttt
cccataactgtagtgccaaccgatgatgagccaccgattattaacgccaatactggttta
gttctattaaaaaatcagatgatgccaattacaacatcaatgctcagtgctgcagatatc
gactctgaagactcgactattagatttatcattgaggcacctttctcaactatcggagag
gtgttgctccgtcaatcagatgctccagaagatccatccacgtggaagtttaattctgaa
gatgagatgtatgaaaaagcagtgaccgaatggcttcagcaggacattacagatggaaag
ttgttttacaggcacatcggccctcacaacacccaggccatcactgatcagttcgttttc
cgagttcaagatgataatgacccaccaaaccaatcaggagaaaatgtatttattattaaa
attctccctgttgatgacatcccaccagagatttaccctggcaccactttgcaactaaca
gtgcatgaataccagctcactgtcttccgtaagaaattcctacggtacacagatttggac
tctgaggacagagatttaaagtatacaatcactcaaccaccaactgatacagacgagaac
agccctggtatcctgggagccattgttttaaccgagagtcagaatacagaggtcacagag
ttcactcaagctcagataaaccatcacaagatttcatacaagcctcctgatctcgagctg
ggaataactccacacgtcgtccagttcaactacacagttgaagacatggcaggaaacagt
gtcagtggagtgtttaccatatttctacagccggttgacaacaagccaccacagattacc
aacactggttttactgtgctggagcgtggcgcacatgttataactggcagtgagctcaat
acgatggaccctgacacggatagcacaaagataacgtttacgctcacccagcctcctcag
catggacagattctggatacgtttaaccctctgagcaaaggggattcttttaactccgat
gatattgctcatggtaggatcgcgtttgttcacaacggagatgagctgacaaatgatttc
tttcagattgatgtaagtgatggcgtccatgtagttccaattacagtgaaaataaatgtg
aagcttatcgatgatgaaactccaaccataaacctacctgagggcacgataggctcctac
attgacgttttggagaacggcgctacagcaatgactgctaacgtcattcaaggaagagat
gaagacacagatgaccttagacttacatatatagtcgaggacccacctgtttttggggaa
atacttgtgaatggagtcccgtccaggcgttttacccaagcagacatcatcagcggctta
gtcgtttatacacatataagtggtgagattggcctggcaacaaaagaagacttttttaat
ttgactcttactgatatgtctgatgaatggacattcggaggtaataaaatcaagggtgtc
agagtgcatgtaaccatcctgccgattgacagccaagcaccgaaggtgtttgttggcaac
cagttcagtgttgtcgaaggtgagaaaaatatcattcagatagcacacataagtgcttct
gatatagacactcccaacgatgaccttttgtgcaccatcatcgttcagccaacggcaggt
tatgtggagaacatctcccctgctccgggttcagaaaaatccaggtctggaactgcaatc
agcgcgtttaccattaaagatattaagcagaatcatatctattatgttcaaagcattcat
aaaggagtggagcctgttgaggacaggttcacgttcaggtgttcagatggcatcaatttt
tcagagagacattttttccccatcgtgatcatcccatccaacgatgagaagccggagatc
cacatgagagagtttgttgtcatggagggcatgaacgttgtcatagatactcctatacta
aatggcgtcgatgctgacgttcccacagatgagttgacgttcattattaccaaacctccc
aaacatggctttattattaatcagttaacctctggcaccgttcccgtgaccaatttcacc
ttggaccaaatcagagaggcctccagtattgtttatgagcatgatgattcagaaacaacc
gaggacagttttaaagttcttctcacagatggaaaatttactgtggaaaaaacagtcatt
gttttggttatcccagtcgacgacgaaacgcccaggatggcgataaatgatggtcttgaa
attgagataggagaggtgaaagatattaccaacaaagttttaaaagcgacagatctggat
tctgaagacagcacactgacgtatataatccgatacggtccaaatcagggaatcctacag
aagaggatgccattcggaactttacagaacatcaccatcggaatgaactttacacaaagt
gaagttgatcaaaatttcatcatctatatacataacggacaggaaggaattcgggacctt
atcaaatttgatgtcaccgatggcatcaacccactaatcgatcgatacttttatgtaaca
gtcggtggaatagatgtggtgttccctgatgttgtcagcaagggggtctttctgaaagaa
ggtggtagagttacccttaccacagatttactcagcactagtgatctcaacagccccgat
gagcacctggtatttaccatcactagagctcccatgagagggcacctagagtgtactgat
tcactcgggatgcccataacctcgttcactcagcttcagctggctggcagcaaagtctac
tacatccacacctcagacgatgaggttaaaatggacagttttgagtttgaagtgacggac
ggctacaacccggtgttcagaacctttcgcatttccataacggacgttgataacaaaaag
cctgttgtcactatacacggactggtagttaatgaggggaaaagtaggttaatcactcct
ttcgagttgacagtagaggatcgagacacagtcgaccgactcctaaaattcaccatcacc
cagttacccattcacggaaagctgctgttcaacaatacccgacccaccacatccttcacc
aagcaggatattaatgaaaacctgataagctacaagcatgatgggacagaatccgcgtcc
gatagcttctcctttaccgttacggatggaacccataccgacttctacatcttcccagac
accgtgtttgaaacgcgcaagccacaaagaatgaagatcacaattctttcagtggacaat
ggtgttccacagattgtggtcaacaagggtggaacagcactgaaaatgctgcccactggt
cacctgggttttgtgattaccagtaaagcactgaaggctgaggacagagacagtccacac
ggagctgtgacttttaaagttacagtgggagcggagcatggttacctcatcgacctgggc
aaggggaatgccaccatcaccacattcacccaagctgacatcaatgacatgcacatctgc
tacgttctccgaaataagaacaacgccacaagtgactccttctatttttctatcgaagac
aacggaggaaacaagctgaagaaccagcagttcaggctgacctgggcgtggatctctctg
gagaaggagtactacatggtggatgaggaggccaaggtgctggaggtggtgctgaaacgc
agggggtacctcggcgagacctcgttcgtcagtattggcaccaaagatggtacagcggag
aaggataaagacttccgaggtaaagcccaaaagcaggtccagtttaacccaggtcagacc
agcgccacctggaaggtccggatactcacagacaacctgtatgaacagtcagaaaccttc
cagattttcctgtctgagcctgtgatgggggcactggagttcccccagtctgctacagtg
gagattatcgaccctgcggatgagtcgacggtgttcatccccgcagctacatacctggtc
gaagaagacatcggagagcttctgattcctgtccgcaggtccggagacgtcagtcaggag
ctgatggttatctgttttacacagcaaggttcagcgactggaactgttcccaccaccgtc
ctgtcctattcagactacatctcacggcctgaggaacacaccagcgttctgcgctttgac
agggatgaaacggagaagccgtgccgcgtagtgattatagacgactcactgtacgaacct
gaggagagctttaacgtcaccctcagcatgcctatgggaggccgcctcggtcaggtgttc
tcaaccacgaggatcaccgtcttacctgattcagatgatgcaccggtgttctactttgga
gaaatcgagtaccacgtggacgagagcgacggcttcgtggaggttcgggtttggaggacc
ggaagtgacctctccaagacgggaacggttacagtacgctctcgaaaaactgaccctttt
tctgctgaagctggtgaggactatgtgggaatcagtaagaatctggacttcacaccgggt
gtcactatgcagacggttcgcgtcaccattctggacgatctgggcaaacctgttctggag
gggcctgagaagttcgagctggtccttcgcatgcctatgaacggcatcctgggagaaccg
ggcaaaaccaccatcttgattaacgactcagtttcagacttacccaaggtgcagtttcgt
gacacagtctacacaggcaatgagaacgacgggcagatcacggccatcatttaccgcagt
ggagacgtgagatacaaatccactgtgcgctgctacagccgtcagggttcggctcaggtc
atgatggacttcaacgagaggcccaacacagatgcttccattatcacattcctaccaggg
gaggtggagaagccctgtactcttgttctggttgatgacacagagcatgaggaggtcgag
gagctcaggctggtgctggggagccccaaaagtgagtctccgtttggggcctccataggg
gctcagaacgaaacgctcgtcaagatcaaggacgacgccgacaaggccattatcaagttc
aagctgaccaagtttagcatcagtgaacccggtgaggctggacaggtttctgtggtgaag
gtaccagtgctgcgagtgggcgacacctccaaggtgtcagtggtgagagtgcacaccaaa
gacggatcagcaacatccggagaggattatcatcctatatcacaagacgtccaattcaaa
gaaggagagacggagcacacggtggagatcgagatcttgtatgacggcgtgcgggaaatg
agggaagcgttcacagtccatctgaaaccggatgagaacatggtggctgagatccagatg
accaaagccatcgtctacattgaggagggaaacagtatggcggacgtgaccttccccgca
gttccagtggtcatatcactcctgcagtatgatgattcagtcagtgccagaaatacccaa
ccggccgctggataccccgtcatctgtgtcacggcctgcaaccctaagtacccagacttc
gagcgcaccggctccatctgcgcaggagagcacattaacaacacgctgacccgttaccgc
tggctcgtgagcgctcccgcggggcccgatggtgtcaccagccctatgagggaggtggac
ttcgacaccttcttcacctcctccaaacgcatcactctggactcggtgtatttccaggca
gggtcgcgtgttcagtgtgcagccagggcggtgaactccggcggggaagaggggctcgag
ctgagcagtgccatcgtgtctgttagtgtggaggagggtttgtgccagcctcgagtcctg
ggtgcggtgggtgctgagcccttttctgccaaactgcgctacacgggtccagacgactct
gaacaccccaacctcatcaagctgatcgtcaccatgccacacatagacggcatgctccct
gtggtctcgacacgtcctctctctaacttcgagcttaccctgagcccagacggcacccgg
gtagggaaccaccgctgctccaatctgctggactacagcgaggtcagaacacggcacggc
ttcctcaccgaggccacacgcaacccggaagccatcgggggcacggcaccctaccagtac
agctccaccctgaggggggagagcacactgcgcttctaccgtaacctccacctggaggcc
tgcctgtgggagttcgtcagctactacgacatgtccgagctgctcagtgactgtggagga
accatcgggacggacggccaggtgttgaacctggtgcagtcgtacgtgacactgcgtgta
cccctgcacgtctcttacgtctttcactctccggtgggtgttggcggctggcagcacttt
gacctgcagtctgaacttagacttaccttcgtctatgacacggccatcctgtggagagac
ggcgtcggcagcccacccgaggccgaactacaaggagcactctatcctacaagcatgcgc
atcaatgagcaaggccgtttggtggttaattttcgtacagaggcacgcttcaggggtctt
tttgtgatgtcccaccccgcttcttctctgacctcgatgattatgtgcatggatcatcct
ggtctgacctttaaccttagcctggtaaggagcgagcccacctacaaccagcccatgcag
caatggaccttcatctctgactttgctgtgagggattattcaggtacatatacagtaaag
ctgctttcctgcactgcccctccaaacctggactacacgcttcctccagtgtgcaatccc
agagagccggtcacattcgacctggacatccgctttcaacaggtgagtgacccggtagct
gcagagtttagcttgaacacacaaatgctgctgttgtcgaaaaggactctgtggctgtcg
gacggctccatgggctttggtcaggagagcgacactgcgttctctgaaggtgatatcatc
tacggccgggtcatggtggatcttgtgcagaatctcggagactcgttcatctgcaacatt
gagaaggtgttcctgtgtacgggggcagacggttacgtgccaaaatacaaccctgataac
tttgagtatggctgcttagctgatgctccatccctcctctacaggttcaagattattgac
aaagctcagccggagactcaggccaggacgtttggaagcatcaactttaatgctttcctg
gctgttgatgatactggagctttagcactggtgagacagcctggatcagacggctttagg
ctcgattcagcacctctgtttcaggtgtcttctggcagagaatggtacatccacaccatc
tacaccgtacgctccagagacaacgccaaccgaggcatcggcaagagaagtgtcgagtac
caccacatatctgaaccccagcacgccattcagagccactctcgttccagaaggtcgacc
ggtggcgtccctcctctggcgaaggatatcggtgctgagaacgagcgaggaaccaacatc
ctgcacatcgctctggagcgcagtggggcgaggcagcaccggcccgacgtcaacatccaa
aaagtggtcgttaccacgggatccaagccgaacgacacaggagacgatcaggttataatg
attgtaggaactttagtgggtgtcctgttaagtgtcatcctcctggtacttgtggttctg
ttggttcgttcgaggaaggacaaggagaaggttacagagtctccgaaaagctccaccagc
acagaacccatgatgacacgaggctgtgacagtaacgacagttcggaggtctga
DBGET
integrated database retrieval system
