Trichomycterus rosablanca: 134335099
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Entry
134335099 CDS
T09921
Symbol
skic3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134335099 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134335099 (skic3)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
134335099 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_19
TPR_16
TPR_11
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_9
TPR_12
ANAPC3
Fis1_TPR_C
TPR_30
HAT_Syf1_CNRKL1_N
ARM_TT21_C
ChAPs
TPR_15
PknG_TPR
HAT_PRP39_N
TPR_COPA_B
TPR_21
COG4_N
Motif
Other DBs
NCBI-GeneID:
134335099
NCBI-ProteinID:
XP_062873563
LinkDB
All DBs
Position
21:complement(8217019..8243944)
Genome browser
AA seq
1566 aa
AA seq
DB search
MTSKEVKSALKSARDAIKNKEYKEALKHCKAVLKLEKNNYNAWVFIGVAASELEQPEQAQ
TAYKKAAELEPEQLLAWQGLANLYEKSDQACFKAELPNIYQKLITLYEISDKVKCFEVSK
KLVDIYQTENNYLQVARVWLRLIQVREAEEGIENVELLELWREMTRLLLDTVEQQDNETQ
QHLLSAFEKALQLTETVPSEDHKQLIQDYIKCLSKLPHEVMKMKEMCDAMLTLYPKDSYP
LEELGRQYLLSDDCSEEAVRCYTRLLEMDPVSSLAHFGLGIKAYQEKKYEDAANSFGLGL
KRMRSSIIGWYYLAQVELKMHRYSDSVTSSSQGLKVSTGNAEDWTQKLLKVKLEALVRAG
TLHRSDEALEVLSQMPDAKNNPALLALKGRAYLQKGQLEEALQVASDLLNSHAGSVEVLT
LKGLVHAANNEHQQAEQSFTEALSQKPDSGELYFLLGQLYWNMGEDTRKDRSKAHTHLLK
AAKLDAYMGSVFRYLGHFYRKVSKDQGRARGCYKRAFELDNTDAEAGAATVDLSMEQGDL
DTALTVLQSVTEKATPGSAKWAWMRRGLYHLKVGQHQEAVADLQAALRADPQDWVCWECL
GEAYLNRHSFTAALKAFAKAHMLQPSSIYSLYQMASIKQILGRFKEAAGEYQQIIASEDY
VPALKGLGECLLALAKTAMEDYLDGKAVDLIQEAIHYLFRAVQRRADLSCLWKLLGDACT
RCSTVSPNRAMVLVPGLLCGAEPLDKNHRLNQKQLLSLGERCYGRVLKLMPDAPSLWCDL
GLNYHHQARLLISQLADQNAQPLLEKALQCVKKAVMLDSENHTYWNALGVVSMTKGIENF
ALAQHSFIKSINAESNNVVAWTNLGTLYLNNNNIELAHEAFKIAQSLEPLYVNCWIGQSL
IAETVGSYDTMDLFRHTTELNTHTEGVKGYAYWVSSTLLDKSNRDSELYRYNIVQMNAIS
AAQVALTKYTERIQTDAEAFVMLGFFNEHLQLKKQATEAYKRAVELLLNSPHTEELNFAL
RGYARALCDTGHWEEAVQHYSSTPLEELHDLTGLALACFRAGQLQESVNAYENALKVAST
EKQKAYILTALALLQHRLGNMDTAKTLLFKCSLLKEPVPESLLCLCALGLVHGDATLASA
ALLELLKLEGVLGEAVDERCLLTCTLLALEGNYSAVQREASRAVFRNPGNPSLWALLSRL
VPQYCPRKADGGAVAGSVACHASMTLGKRALLYSGVNQLASGRHSGEDHKRNALKTIQRA
VLLCPDDPAGWAGLMAACHTENVACALSGSTSRREGLERVLLTLVSEKVKGLQREDGLLA
QALEGWVLQQAVTGLKQSTRYDEAEALCSQYLSACPEHPAVFLLLQQVQCERLLLPDTKN
GIPPAVLDQLSAAVLANPTSVSGWHWLAEVYRSQGLLAQASVALRQSLQLASQLGHYSGK
ISSLLRLALLSLTPCMAGAGGEEWSSLVREACTEVLKLGPSPVASVFQALLQFSIKMGAR
ETRRLLEKIVYGPVSREAHTVVSVARWYLLRHLHAKDDLELIDTLMVETEAAGDLRLLEF
HKRLYP
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtaaagaagttaaatctgctttaaaaagtgccagagatgcaattaaaaacaag
gagtataaggaggctctgaaacactgcaaggctgttttaaagcttgagaagaacaactat
aatgcctgggtgtttattggagttgcagcgagtgagctggagcagcccgagcaggcacag
acagcgtataagaaagcagcagaactggaacctgagcagcttctcgcatggcaggggctg
gcaaatctgtatgaaaaaagcgaccaagcatgctttaaagctgagttgcccaacatctat
caaaaactcataacattgtatgaaatttcagataaagtcaaatgtttcgaagtgagcaag
aagttggtggacatctatcaaacagaaaataactatttacaggtggcgagggtatggttg
cgactcattcaggtacgagaggcagaggaaggaatcgaaaacgttgagctgcttgaacta
tggagggaaatgacccggctgctcctggacactgtggaacaacaggacaatgagacacag
caacatctcctgtctgcttttgaaaaggcacttcaacttacagaaactgtacccagtgag
gaccacaaacaactcatacaagattacataaaatgcttgtcaaaacttcctcatgaagtg
atgaagatgaaggagatgtgtgatgccatgctgaccctctacccaaaagactcttatccg
cttgaagaattaggacgccaatatttgctgtcagatgattgcagtgaggaagccgtcagg
tgctacactcgtctcttggagatggacccagtcagttcactggctcattttggtctcggt
ataaaggcttatcaggagaagaagtatgaggatgctgctaacagctttggtcttgggctg
aaacggatgagatccagcatcattggctggtactaccttgctcaggttgagctgaaaatg
cacagatattcagacagtgtaacgtcctccagccaaggactgaaggtgagtactggcaac
gctgaggactggacccagaagctgctgaaagtaaaactggaggctctggtgagagctgga
acattgcataggtcagatgaagctctggaggtgctttctcagatgccagatgccaaaaac
aatcctgcactgttagctcttaaagggagagcctacttacaaaaggggcagctcgaagaa
gccttgcaggtggcctctgacctgctgaactctcacgctggttctgtggaggttttaact
ttaaaaggactggtacatgcagctaacaatgagcaccagcaggcggagcagagttttaca
gaagctctgtctcagaaaccggacagtggggagttgtacttcctgcttgggcagctttat
tggaacatgggagaggatacccgaaaggacaggagcaaagctcacactcacctgttaaag
gctgcaaagctggatgcttatatgggctcagtattccgttacctggggcacttctacagg
aaggtatcgaaagaccagggccgagccagaggctgctataagagagcttttgagctggat
aatactgatgctgaggctggagctgccactgtggatctcagcatggagcaaggagacttg
gatactgcgttaacagttctgcagtcagtgaccgagaaggcgactcctggttcagccaaa
tgggcctggatgagaagaggcctgtaccatcttaaagtgggccagcatcaggaggctgtt
gcagatctgcaggcagcattgagggcagatcctcaggactgggtgtgttgggagtgttta
ggtgaggcttacttgaatcgccacagctttacagcagcccttaaagcttttgctaaggcc
cacatgctgcagcccagctccatctacagcctttaccaaatggcctccattaaacagata
ctgggcaggttcaaagaggcagcaggggagtatcagcagatcatagcatctgaagattat
gtgccagcactgaaaggccttggggaatgtcttttggccttggcaaaaacagctatggaa
gactacctggatggcaaagcggtagacctgatacaggaagccattcattatttattcagg
gcagtgcagagacgtgcagatttgtcctgcctgtggaagcttctgggtgatgcctgcacc
cgctgcagtactgtttctccaaaccgagctatggtactggtacctgggttgctgtgtgga
gctgagcctttggataagaaccacagactgaatcagaaacagttactcagtctcggggaa
agatgctatggacgtgttctaaaactgatgcccgatgccccaagtctgtggtgtgatctg
ggcctaaactatcatcaccaggcaaggctgttaatctctcagctggcagaccagaatgcc
caaccactgctagagaaagcccttcagtgtgttaaaaaggcagtcatgctggatagtgag
aatcacacatactggaatgcactgggagtggtgtccatgactaaaggaattgaaaacttt
gccctcgcacagcacagtttcatcaaatcaatcaacgcagagtcaaataatgttgtggca
tggacaaacctgggtactctgtatttaaataacaacaacattgagcttgcacacgaggcc
ttcaagattgcccagtcactggagcctctgtatgtaaactgttggatcggacagtctctt
attgcagagacagtaggaagctacgacaccatggacctcttcagacacaccacagagctg
aacactcatactgaaggagtgaaaggctatgcctactgggtttcttccactctgctggac
aagagtaaccgagactcggagctgtaccgttacaacatagttcagatgaacgctatctct
gctgctcaggtggccttaaccaagtacacagagagaattcagacagatgccgaagctttt
gtgatgcttgggttctttaatgaacacctgcagctgaagaagcaggccactgaagcctat
aagagagctgtggagttgctcctgaacagcccacacactgaggaactcaactttgctctg
agaggctatgcacgtgcactctgtgatacagggcattgggaggaggcagtgcagcattat
tcctccacaccactagaggagctacatgatcttacaggattggcactagcctgctttaga
gcaggacagcttcaggagagcgttaatgcctatgagaacgctcttaaggtggcgtccact
gagaagcagaaagcctatatactaacagccctggctttactgcagcacagactgggcaac
atggacactgccaaaactctgcttttcaagtgctctttgctaaaggagccggttccggag
agcttgttatgtctgtgtgctcttggcttggttcatggagatgccacccttgccagtgct
gctctcttagagctgttgaagcttgagggagtgctaggagaagctgttgatgagcgctgc
ctgcttacctgcactctgctggctctagagggcaactacagcgccgtgcaaagagaggca
tccagagctgtgttcaggaacccaggaaatccatctctttgggctctcctctccagactg
gtgccacagtactgtcccagaaaagctgatggaggagcagtggcaggcagtgtggcatgt
catgctagcatgactctaggaaagagggcgttgctgtacagtggagtgaatcagctggcc
tcaggcagacactcgggagaagaccataagagaaatgcgctaaagaccatccagagagct
gtgctgctctgtccagatgatccagctgggtgggcagggcttatggccgcatgtcacact
gagaacgtagcttgtgctctgtcaggctccacctctcgaagggagggtctagagagggta
ctcctgaccctcgtgtcagaaaaagtaaaaggcctgcaaagagaagatgggctgttggcc
caggctctggaaggctgggtgctgcagcaggctgtgaccggacttaaacagagtactcgt
tatgatgaagctgaagccctctgctcacagtatctgagtgcctgccctgagcatcctgca
gtgttcctgttgttacagcaggttcagtgtgagcgcctccttctgcctgatactaaaaac
ggcatccctcctgctgttttagaccagcttagtgctgctgttctcgccaaccccacttca
gtgtctggctggcattggctggctgaggtctaccgctcccagggtctgctggcacaggct
tcggtggccctcagacagagcctgcagctggcctctcagctgggtcactacagtggaaag
atcagcagcctgctacgacttgccctgctgtccctcacgccttgcatggctggagctgga
ggagaagaatggagcagtcttgttcgtgaagcctgcactgaggtgctgaagctgggtcca
tctcctgtggcatctgttttccaggctctgctccagttttccatcaaaatgggggccagg
gaaacccggcgtctgttggagaagattgtttatggcccagtctcacgagaggcacataca
gtcgtgtctgtggcacgttggtatcttctacgccacctacatgccaaagatgacctggag
ctaatagatactctgatggtggagactgaagctgcaggagacctcaggttgttagagttc
cataaacggctgtatccctaa
DBGET
integrated database retrieval system
