Trichomycterus rosablanca: 134335139
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Entry
134335139 CDS
T09921
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1 isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03440
Homologous recombination
trn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134335139 (top3b)
03460 Fanconi anemia pathway
134335139 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134335139 (top3b)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134335139 (top3b)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
134335139 (top3b)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Topoisomerases
134335139 (top3b)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
134335139 (top3b)
FA (Fanconi anemia) pathway
134335139 (top3b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Fer4_11
Motif
Other DBs
NCBI-GeneID:
134335139
NCBI-ProteinID:
XP_062873662
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Position
21:complement(4899436..4915035)
Genome browser
AA seq
861 aa
AA seq
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MRTVLMVAEKPSLAQSIAKILSKGSCSSHKGLNGACSVHEYVGSFMGQSVRFKMTSVCGH
VMSLDFTGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKGCDYVVLWLDCDK
EGENICFEVLDAIQPVMNKSYGNERTIYRAKFSSITDTDICNAMNQLGEPNKNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFKGKDSPITLDWNRVRVFDREVGQMFVNLAKSAREAQVESVSKKEKAKQRPLA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLRQQSNN
SYWAETVKALLAEGINRPRKGADAGDHPPITPMRAATESELGSDGWRLYEYITRHFIATI
SHDCKFLQTTINFQIGSEGFSCSGKTLISAGFTEVMPWQGIALEEALPVCEKGDTFTVDD
IKLLEKQTNPPDYLTEAELITLMEKHGIGTDASISVHINNICQRNYVTVESGRKLKPTNL
GIVLVHGYYKIDAELVLPTIRSAVEKQLNLIALGKANYHQVLQHTLDIFKRKFHYFVDSI
AGMDELMEVSFSPIAATGKPFSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGSRGKSYSLCPYCFSNPPFRDMKKGMGCNECTHPSCPHSLNS
LGIGQCVECETGVLVFDPNSGPKWRMACNKCTVVVHFFEQAHKMQVAQDSCESCEASLVM
VDFNKARSPLGEGETQHTGCVFCDPVFQDLVELKHAAMRHPMHRGGGARRGRGRGRGRRP
GSRANPKKPKDKMAALAAYFV
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgttttgatggtagcagagaaaccttctctggcacaatccatcgctaaaatc
ctttctaaaggtagctgttctagtcataaaggtctgaatggagcatgctcggtgcacgag
tatgtgggatctttcatgggccaaagcgtccgtttcaagatgacgtcagtctgtggccac
gtcatgagtctggattttacaggaaaatacaataattgggataaagtggatcctgcagag
ctgttcagcaaagcaccaactgagaagaaagaggccaaccctaaactcaacatggtcaaa
ttcttgcaggttgaagccaaaggttgtgactacgttgttttatggttggattgtgacaaa
gagggagaaaacatttgttttgaggtcttagatgccatccagccagtgatgaataaatca
tacggtaatgagcgcaccatataccgggctaagttcagctccatcacagatacagatata
tgtaatgccatgaaccagctgggggaaccaaacaagaatgaggctctgtctgtagatgct
cggcaagagctggatcttcgaatcggctgtgcttttacacgctttcaaaccaagtacttt
caaggaaaatacggtaatctggactcttctctgatctcctttggcccatgccaaacacca
acactggggttctgtgtagagcgacatgataaaatccagtccttcaaacctgagacttac
tgggtcatccaggccaaggtgtttaaagggaaggacagtcctatcacattagactggaat
cgtgtgcgtgtgtttgacagagaagttggacagatgtttgttaacttggcaaagtcagcc
agagaagctcaggttgagtcggtcagtaagaaggaaaaagccaagcagaggcctctggcc
ttgaacactgtggagatgttacgagtagccagttctgccttgggaatgggtcctcagcat
accatgcagatagcagagcgtttatacacacagggttacatcagctaccctcgcacagag
accacacactaccctgaaaactttgacctcaagggaacactcagacaacagtccaacaac
tcctactgggcagagacggtaaaagctttacttgctgaaggtattaaccgacctcgaaaa
ggcgcggatgcaggagatcatccaccgatcaccccgatgagggctgccactgagagcgag
ctcggcagtgacggctggaggttatatgagtatataacacgccactttatagccacaatc
agccatgactgcaagttcctgcagaccactattaacttccaaatcggatccgagggattc
tcctgctccggcaaaactcttatctctgctggttttacagaggtgatgccatggcagggt
attgcacttgaggaggcgttgccagtgtgtgaaaaaggagacacgtttacagtagatgat
attaaactgctggagaaacagacaaacccgcctgactatctcaccgaggctgaactcatc
acactcatggagaaacacggcattggaactgatgctagtatatctgttcacattaataac
atctgtcagaggaattacgtcactgtagagagtggacgcaaacttaaacctaccaatctg
ggtattgtcctagtacatggctactacaaaatagatgcagagttggtgttgcccaccatc
cgcagtgcagtggagaagcagctgaatcttatcgctttggggaaagcaaactaccatcag
gttctgcagcacacgctggacatctttaagagaaagttccactattttgttgattccatt
gctggtatggatgagctgatggaggtgtccttttcacccattgctgctacagggaagcct
ttttcacgctgtggaaagtgtcatcgcttcatgaagtacattcaggccaaaccaagtcgg
ctgcattgttcccactgtgatgagacatacagtctgcctcagaatggagccatcaaactc
tacaaggagctgagatgtcctctggatgagtttgaactggtgctgtggacatcaggttca
cgtgggaaaagctactcactgtgtccctactgctttagcaaccctcccttcagagacatg
aagaaaggcatgggctgtaatgagtgtacccatccatcttgtccacactctctcaactct
ctcggcatcggtcagtgtgtggagtgcgagactggcgtcctcgtttttgaccctaattct
ggcccgaagtggcgcatggcctgtaacaagtgcaccgtggtggtgcatttctttgaacag
gctcataaaatgcaggtcgctcaggacagctgcgagtcttgcgaggcctcgttggtcatg
gtggacttcaacaaagctcgatcacctctgggtgagggcgagacgcaacacaccggctgt
gttttctgtgatcctgtctttcaggatctggtggagctcaagcatgctgccatgaggcat
cctatgcacagaggaggaggagctcgcaggggacggggtagaggcagaggaaggaggcct
ggcagccgagccaatcccaagaagccaaaagacaaaatggcagcacttgcagcatacttt
gtatag
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