Trichomycterus rosablanca: 134335212
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Entry
134335212 CDS
T09921
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134335212 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134335212 (cnot6l)
Enzymes [BR:
trn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
134335212 (cnot6l)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134335212 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134335212 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_NXF1-5
LRR_R13L1-DRL21
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
134335212
NCBI-ProteinID:
XP_062873768
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All DBs
Position
21:19545455..19559364
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AA seq
549 aa
AA seq
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MPKEKYEPPDPRRLYTIMSAEEAANGKKSNWAELEITGRVKNLSSSLWTLTHLTALHISN
NNLSRLPPEIAKLPHLVYLNLSSNKLRSLPAELGNMVCLRELLLNNNCLRVLPYELGRLF
RLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQMMP
TAVFTIMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQ
YYTFFLETLKERGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFALVQKHTVEFNQV
AMANSEGSEVMLNRVTTKDNIGVAVLLEVKKELFTGGLNPPVEKQLLLVANAHMHWDPEY
SDVKLIQTVMFLSELKSIAERASSPDGSGSPATDSVSIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFKELRYTDCLNNFSCNGKNGKPDGSITHSFQLKSAYESHLMPYTNYTYDFK
GVIDYIFFSKTHMKVLGVLGPLETQWLVDNCIAGCPHPHIPSDHFSLLAQLEYQSPPSPL
NGLHLAIPR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggagaaatatgagcctccagacccacgcaggctgtacacgatcatgtctgcg
gaggaggcggccaatggaaagaaatccaactgggctgagttagaaattacagggcgagtg
aagaacctgagcagttcgctatggacgctcacccatctgaccgccctgcacatcagcaac
aacaacctcagccgcctccctccggaaatcgccaagcttcctcacctggtttaccttaac
ctgtcctccaacaagctccgcagcctgccggcggaactcggcaacatggtgtgcctcagg
gaattacttttgaacaacaactgtttgcgggttttgccttacgaactcgggcggctgttc
cgcttacaaaccctcggtctgaaaggaaacccactttcccaggatattctcaacctgtac
caggagcccgatggaacaagaaagctgttgaattatatgcttgacaatcttgcagtccat
ccagaacaactcccccaaagaccctggatcacgctgaaggagcgagaccaaatgatgccc
acagccgtgttcacgatcatgtgttacaacgtgctttgcgacaaatatgcaaccaggcag
ctgtacggctactgtccatcctgggctctcaactgggagtacaggaagaagggcatcatg
gaggagatcaccaactgcgatgctgacatcatcagtttacaggaagtggaaaccgagcag
tactacacgttcttcttggaaaccctgaaggagcgtgggtacgacggctatttctgtccc
aagtctcgtgccaaactggtgtccgagcaagagaggaagcacgtggacggctgcgctgtc
ttcttcaagacggaaaaatttgcactggttcagaaacacacggtggagttcaatcaggtg
gccatggccaactcggaaggttcggaggtcatgctgaaccgggtcacgaccaaagacaac
attggggtcgccgtgctgctggaggtcaagaaggagctgtttactggaggtctaaacccc
ccggtagagaagcagctcctgctggtggctaacgcccacatgcactgggaccctgaatac
tcggacgtcaagctcatccagactgtgatgttcctgtccgagctgaagagcatcgcggag
agggcgtcgagcccggacggctccgggtcccccgccacggactccgtatccatacccatc
gtcctgtgtgccgacctcaactcgctcccagactctggtgtggtggaatacctgagcaac
ggcggcgtggcggagaaccacaaagacttcaaagagttacgctacactgactgtctgaac
aacttcagctgcaacggcaagaacggcaagccggacggtagcatcacgcacagctttcag
ctgaagagcgcctacgagagccatctgatgccttacaccaactacacctacgacttcaag
ggtgtgatcgattacattttcttctccaagactcacatgaaagtgctgggtgtgctgggt
cccctggagacccagtggctggtggataactgcatcgccggatgtccccacccgcacatc
ccctcggatcacttctccctcctggcccagctggagtaccagtcccccccgtcccccctc
aacgggctccacctggccatccccaggtag
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