Trichomycterus rosablanca: 134335227
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Entry
134335227 CDS
T09921
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04020
Calcium signaling pathway
trn04080
Neuroactive ligand-receptor interaction
trn04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
134335227 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
134335227 (grin1b)
04082 Neuroactive ligand signaling
134335227 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
trn04040
]
134335227 (grin1b)
Ion channels [BR:
trn04040
]
Ligand-gated channels
Glutamate (ionotropic)
134335227 (grin1b)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
SIP
Peripla_BP_6
DUF6724
NYN
DUF3663
Motif
Other DBs
NCBI-GeneID:
134335227
NCBI-ProteinID:
XP_062873792
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Position
21:complement(6304176..6338054)
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AA seq
910 aa
AA seq
DB search
MRLVLFAFLLSFSCARGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANNIYGRDKFKMNAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAQVWFDMMREFRWNHIILIVSDDHEGRAAQKKLETL
LEERETKSKNRNYENLDQLSYDNKRGPKAEKVLLFSQDTNLTALLQEAKELEARVIILSA
SEDEAAAIYKAARQLNMTGSGYVWLVGEREMSGKALREAPDGLLGLQLINGKNESAHIYD
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGLTGRVEFNDD
GDRRFAHYSILNYQKNRSVQVGVYNGSQVVMNTQRKIIWPGGETEKPRGYQMSTRLKIVT
IHQEPFVYVKPTLRDGTCKEEYTVNGVLIKKVICTGPNETIPGRPIVPQCCYGFCIDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDGKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
VAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQMCAEDQFLLCLPLGVMKRPPI
YVALNLHQAQ
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttggttctgttcgcttttcttctttccttctcgtgtgcccgcggaggctgcgag
cccaagatcgtcaacatcggcgctgtgttgagccagaagcgctacgaacaggtgttcaag
gacgcggtgacccaagcgaacaatatttacggccgagacaagttcaagatgaacgcgatc
tctgtcacgcacaagccaaacgccattcagatggcactgtccgtctgtgaggacctcatc
tcaaaccaggtctatgctattttagtgagtcatccaccccagtctaatgaccacctgacc
ccaaccccagtgtcctacactgctggattctaccgcatacctgtggtggggctaaccaca
agaatgtccatctactcagataagagcatccacctgtcgttcctgcgcacggtgcctcca
tactcacaccaggcccaggtctggttcgacatgatgcgagagtttcgctggaaccacatc
atcctgattgtgagcgatgatcacgagggcagggcggcacagaaaaaactggagacgctg
ctggaggaaagagagacgaagagtaaaaacaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggcagagaaagtgctcttgttcagtcaagatacaaac
ctgactgctctgcttcaagaagctaaagaactggaggccagggtcatcatcctgtctgcc
agtgaagacgaggctgcagcaatttacaaagcagcacggcagctcaatatgacaggctca
ggatacgtgtggctggttggagaaagagagatgtctggtaaagcattgagagaagctcca
gacggcttgctcggcctgcaactaatcaatggcaagaacgagtcggcacacatctacgat
gcagtggcggtggttgctcagtctatccaggagctttttgagaaggagaacatcacagag
cctcctcgaggttgtgtgggcaacacaaacatctggaagactggcccactcttcaaaagg
gttttgatgtcatcgaagtatccagatggcctcacaggccgtgtggagtttaatgacgac
ggcgacaggaggttcgcccactacagcatcctcaactaccagaagaatcggtctgtccaa
gtgggcgtctacaatggctcacaagttgtgatgaacactcagaggaagatcatttggcct
ggaggagagacagaaaagccaagaggatatcaaatgtcaacaagactgaagattgtcacc
attcatcaagagccattcgtgtatgtaaagccaactctgagggatggaacatgtaaggag
gagtacacagtaaatggagtcctgatcaaaaaagtgatctgcactggtccaaatgagacc
attcctggtcgtccaatagtgcctcagtgctgctatggattctgcattgaccttttgatc
aagctggcaatgacgatgaactttacctatgaagtgcatctggtggctgatgggaaattt
ggcactcaggagcgtgtgaataacagcaacaagaaggagtggaacggcatgatgggagag
ctcctgggtggcctggcagacatgattgtggctccactcacaatcaacaatgaacgtgcc
cagtacatcgagttctccaaaccgtttaagtaccaagggcttacgatccttgtcaaaaag
gaaataccacgcagtacactggactcgttcatgcagccctttcagagcactttgtggtta
ttggtgggtctatcggtccatgttgtggcggtgatgctctacctattagaccgcttcagc
ccatttggaaggtttaaagtaaatagtgaggaggaagaagaagatgccctcaccttatcc
tccgctatgtggttctcctggggagtgctcctgaactccggtatcggagaaggtgcccca
cggagcttttcggcgaggattttaggaatggtgtgggctggttttgctatgattatagtt
gcatcttatactgccaatttggcagccttcctagtgctggatcggcctgaggagcgcatt
accggcatcaacgaccctaggctgcgaaacccatcagataagttcatctacgccacggtg
aagcagagctctgtggacatttacttccggcgccaggttgagctgagcaccatgtaccgc
cacatggaaaagcacaactacgaaagcgccgctgaggccatccaggctgtgcgagacggc
aaactccatgcttttatctgggattcagctgtgctggagtttgaagcctcgcaaaaatgt
gacctggtcaccaccggagaactattcttccgttcaggctttggtattgggatgcgtaaa
gacagcccatggaagcaaaatgtttcactggctattctcagctcccatgagaatggtttc
atggaggaccttgataaaacctgggtgaggtaccaggagtgtgactctaggagcaatgcc
ccagccacactcacctttgagaatatggcaggcgtgtttatgttggtggctggcggcatt
gttgccgggatcttcctcatcttcattgaaattgcttacaagagacacaaagatgctcgc
aggaagcagatgcagctggccttcgcagcagttaatgtttggaggaagaacctgcagatg
tgtgctgaggatcaattccttctctgtcttccactgggcgtcatgaagagacctcccatt
tatgttgccctaaatctccaccaagcacagtaa
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