Trichomycterus rosablanca: 134335320
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Entry
134335320 CDS
T09921
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
trn
Trichomycterus rosablanca
Pathway
trn04010
MAPK signaling pathway
trn04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
134335320 (cacna1ba)
04020 Calcium signaling pathway
134335320 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
trn04040
]
134335320 (cacna1ba)
Ion channels [BR:
trn04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
134335320 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
134335320
NCBI-ProteinID:
XP_062873915
LinkDB
All DBs
Position
21:complement(6100301..6223107)
Genome browser
AA seq
2292 aa
AA seq
DB search
MARFEDELPARYGGGSPSAAGRGPNRQQGPPGPHRVYKQTMAQRARTMAIYNPIPVKQSC
LTVNRSLFIFSEDNVIRKYAKRVTEWPPFEYMILATIIANCIVLALEQHLPAGDQTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKDSYLRNGWNVMDFVVVLTGILTTVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMGK
FHRTCFKDGERVGDYPCGQEAPAQTCENNSTCEEYWIGPNFGITNFDNILFAVLTVFQCI
TMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKRQE
FLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKSPLDGAWYKRKCNNPVLKRSK
KSKNDLINAEEGEDHFTDILSAAPQSSPFARASVKSSKNENSSYLRRKEKRVRFFIRRMV
KSQGFYWTVLCLVGLNTLCVAIVHYNQPDWLTNALYLAEFVFLGLFLIEMSLKMYGLGPR
NYFHSSFNCFDFGVIVGSIFEVIWAAVKPGASFGISVLRALRLLRIFKVTKYWNSLRNLV
VSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQV
LTGEDWNAVMYHGIESQGGVSGGMFSSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQELT
KDEEEQEEAISKKLALQKAKEVKEVSPMSAANISLAAPNGGALSHGSSNSSSESPNYVCS
PAHHYLSQEQRRSMKMMSVWEQRTTQIRKHMLASSEALYSEELNPRLASSQHLRPDITTH
LDRPLVVEPRCDWDLQGKAGTPEDPKPPVNSDAHTMEPPQSQPPRKHHHRRRDRQNNDAQ
ENGETGVSRHHVHHSRSKDADGTRAKDGKGERSHSREGRGEHRHHRSHRAGREGNGVVST
TTKGERRSHHRDGSRSANRDCERSSRGEEGGSGGRRKHRQRASKAQSAVEGEEQRENGER
EEEKSGHRQTDMGGDLLSITSQQPSVGSRWGLEKPEDSDNQRNVSRTGGLGVHIPVTITS
PPGETTLIPMNSIDSETVPMTEKNLEGVNQTGHRPILPYSSMFIFGPTNPVRRLCHYIVS
LRYFEMCILVVIAMSSFALAAEDPVQANAPRNNVLKYLDYVFTGVFTFELVIKMVDLGLL
LHPGSYFRDLWNILDFIVVSGALVAFAFTGTKGKDISTIKSLRVLRVLRPLKTIKRLPKL
KAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKGQPKDCRGQFLD
YDKHEVSAQPREWKKYDFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDQGPSPGY
RIEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSKCSLEKNERACIDFAINAKP
LTRYMPQNQQSFQYRMWKFVVSPPFEYSIMIMIALNTVVLMMKYYRAPDAYEAMLKYLNI
VFTFLFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEINDRLLNLSFLRLF
RAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALTEDS
AINHHNNFRTFFQALMLLFRSATGEAWHEIMLSCLSHQPCDELSGTQGKECGSDFAYFYF
VSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYRD
MYEMLLHMSPPLGLGKKCPPRIAYKRLVKMNMPIADDTSVHFTSTLMALIRTALEIKLAS
GIIAQRLRDAELKKELTTVWPNLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRA
KKLQLQQQQHKDQQEPGSQNNVGALLEPILNPMQEKSRSILDCPSDPQLLRPSSATLNNG
HTLHDNPIKSSSSWAAEQTKEVKGSKKRPISRGQSEDMSNPNTAQQVSVEMRKMENSAST
IAPAGLEGQGRAVSMPKLNAEMQRSHSRHSPGTLLPTIPDSPLRRSASTFAPQRPQEDLV
NDYNLEKPNQERPHHHHHHHRCHHRRDREKKQRSLDRSSGGQPAGTGGTAHDPDGDPSLR
ERGHDRGRSHERKHHSSTAEKHRYYSCDRYGSREHFPAKPAPASCATSPGEGQDDAFNKQ
GSGWARGSPVLLSSGSSTPSHGRRQLPQTPLTPRLAVAYRTANSSPVSSAMGTQATLPPP
SPVMRISSEPFLQSQTALLSSQQIITLPTLSQNALHRMPNGYHYIMGVPAGSDGGSDATR
HAYPKAEEEEWC
NT seq
6879 nt
NT seq
+upstream
nt +downstream
nt
atggcccgctttgaagacgagctgccggcccgctatggaggcggctctccgtcggctgcg
ggccgcgggccgaaccggcagcagggccccccgggtcctcaccgggtttataagcagacc
atggcccagcgagcccgcaccatggccatctacaaccccatccctgttaaacagagctgc
ctcactgtcaaccgctccctcttcatcttcagtgaggataacgtgattcgaaagtacgcc
aagagagtaacagagtggcctccattcgagtacatgatccttgccaccattatagcaaac
tgcatagtactagcattggagcagcatttacctgcaggcgaccagaccccgatgtcagag
agactggatgacacagagccctacttcattggcatattttgcttcgaggctgggattaag
atcatcgctctcggatttgcttttcataaagactcctacctccggaacggatggaatgtc
atggattttgttgtcgtgttgactgggattctgaccactgttggggcagactttgattta
cggacgcttagagcagtacgagtcttacggcctcttaaactggtttctggaattcccagt
cttcaggtggttctgaagtccatcatgaaagccatggtgcctctgctgcaaatcggcctg
ctgcttttcttcgccatcctcatgttcgctatcatcggcctggacttctacatgggcaaa
ttccaccgaacctgctttaaagacggggagcgagtgggggactatccctgtggacaggaa
gctccagcacaaacatgtgaaaacaactccacctgtgaggagtactggatcggccctaac
tttggcatcactaactttgacaacatcctctttgctgtgctaactgtcttccagtgcatc
actatggagggctgggtggacattctgtacaacgccaacgacgcctcagggaacacctgg
aactggctgtatttcattccactcatcattatcggctccttcttcatgctcaacctggtt
ctgggcgtgctgtcaggggagttcgctaaggagcgagagcgggtagaaaaaagacaagag
tttctgaagctgcgcagacagcagcagattgaacgagaacttactggatacctggagtgg
atctgcaaagcagaggaagtcatgcttgctgaggaggataagaatgcggaggaaaagtct
cctcttgatggtgcctggtacaagaggaaatgcaacaacccagtgctgaaaaggtctaag
aagagcaaaaacgacctcatcaatgcagaagagggagaggatcactttactgacatctta
tcagcagcacctcagagctctccatttgcccgggccagtgtgaaaagcagtaaaaacgag
aactcctcatacttgagaaggaaagagaagagggttcgcttcttcattcggcgcatggtg
aagtcacagggtttctactggactgtgctgtgcctggtgggtctgaacacactgtgtgta
gctatagtgcactacaaccaacccgactggttaaccaacgcactgtatctggcagagttt
gtattcttgggcctgtttttaattgagatgagcctgaagatgtacggcctcggccccagg
aactacttccactcctccttcaactgcttcgactttggcgtgatagtaggaagcatcttc
gaggtgatctgggctgcagtgaaacctggagcatctttcggcatcagtgtgttacgagct
ctgaggctgctgaggatcttcaaggttacaaagtattggaactctttgcggaacctggtt
gtgtctctgctcaattccatgaagtccatcatcagcctgttgttcctcctcttcctgttt
attgtggtgtttgctctgctggggatgcagctctttggaggacaatttaattttgaagat
gaaaccccgacgacaaacttcgacacgtttccagcagctattctgacggtgttccaggtt
ctgacaggagaggactggaacgcagtgatgtatcatgggatcgagtctcagggaggagtg
agcggcgggatgttctcttctgtttacttcattgtgcttactctgtttggaaactacact
ctgcttaacgtcttcttggctattgctgtcgacaaccttgccaatgcacaagaactcact
aaggatgaggaggaacaggaggaagctattagcaagaagttggccctgcagaaggctaaa
gaggtgaaggaagtcagtcccatgtcggccgcaaacatctctctggcagcgcccaatgga
ggtgcactgtcacacggctcctccaactccagctctgaatcgccgaattatgtctgctcc
cctgcccatcactacttgagccaggaacagcgtcgctcaatgaagatgatgtccgtttgg
gagcagcgcaccacacagattcgcaagcacatgctagccagcagcgaggctctttacagc
gaagaactcaaccctcgtctggcttcgagccagcaccttcgtcctgacatcaccactcat
ctggaccggccacttgttgtggagccacgctgcgactgggacctgcagggtaaagcaggc
acacccgaggaccctaaacctcccgtaaactctgatgctcacaccatggagcctcctcag
tctcaaccaccacgtaagcaccatcaccgcagacgtgatcggcaaaacaatgatgctcag
gagaatggtgagacgggtgtatcgcgacaccatgtgcaccacagtcgcagcaaagacgca
gatggcacaagagctaaggatggcaagggggagcgcagtcatagccgtgagggcagagga
gaacacaggcaccaccgctcacacagggcaggccgagagggaaacggggtggtcagtact
actacaaagggcgagaggcgctcgcaccatagagatgggtcacgctcggccaacagggac
tgtgagaggagctcaagaggagaggaaggaggcagtggaggaagaaggaagcatcgacag
cgggccagcaaggcccagtctgcagtggagggtgaggagcagagggagaacggggaaaga
gaagaggaaaagtcaggacacaggcaaacagatatgggtggagatttgctgtccattaca
tcccagcagccttcagtggggagcagatggggtctggaaaaaccagaggattcagataac
cagcgaaatgtcagccgcacaggtggtctgggtgtccacatccctgttaccatcacttct
ccgccaggcgagaccactctcataccaatgaacagtatagacagtgagactgtacctatg
accgagaagaacctggagggagtgaaccagaccggccatcgtcccattctcccatacagc
tccatgtttatctttgggcccactaacccggtaaggcgtttgtgtcactacatagtcagt
ctgcgttactttgagatgtgtatcctggtggttatagctatgagcagctttgcactggct
gctgaagacccggtgcaggctaacgccccacgaaacaatgtgctgaaatatttggactac
gtcttcactggcgtgttcacgttcgagttggtaattaagatggtggatttgggtttgctg
ttgcatcctggttcttacttcagagacctgtggaacattctggactttattgtggtcagt
ggggctctggtggcattcgcttttacagggaccaaaggcaaagacatcagcaccatcaag
tctctcagggtgttacgagtcctccgacctctgaagaccatcaaacggctaccaaagctg
aaggctgtgttcgactgtgtggtaaactctctaaagaacgtgctaaacatcctcatcgtc
tacatccttttcatgtttatctttgccgtcatcgcagtgcagctgtttaagggaaagttc
ttctactgcactgatgagtctaaaggacaaccgaaggactgcagaggacagttcctggac
tatgataagcatgaggtttcagctcagcccagagagtggaagaagtacgactttcactat
gataatgtgctgtgggcttttcttaccctgttcaccgtgtctactggagaaggctggcct
acggttctgaagcactctgtggacgcaacctttgaggaccagggtcccagtccaggctac
cgtattgagatgtccatcttctacgtcgtctactttgtcgtcttccctttctttttcgtc
aacatctttgtggccttgatcatcatcacatttcaggagcagggtgataaagccttgtct
aagtgcagtctggagaaaaatgagagagcctgtatagactttgccatcaatgccaagccg
ctcacccgctacatgccacagaaccagcagtccttccagtataggatgtggaaatttgtg
gtctcaccaccttttgagtactccatcatgatcatgattgctctcaataccgtggtcctc
atgatgaagtactaccgagctccagatgcttatgaagcaatgctgaagtatctcaacatc
gtcttcacgtttctcttttcattggagtgcattctgaaaattattgctttcggtcctctt
aactacttgaaggacgcgtggaacgtgtttgactttgtgacagtgttggggagcattaca
gacatcctggtcactgagattaatgatcgtctgttaaacctaagcttcctgaggctgttc
cgggcagctcgtctaatcaaactcctcagacagggctacaccatccgtattctgctctgg
acctttgtccagtcttttaaggctctgccctacgtttgccttttaatcgccatgctgttt
ttcatttatgccataataggaatgcaggtttttggaaacattgcactgactgaagacagc
gctatcaatcaccacaataacttccgtacattcttccaagccctcatgctgctcttcagg
agcgctacaggagaagcctggcatgagatcatgctgtcgtgtctgagtcaccagccgtgc
gatgaactctcggggacgcagggaaaagaatgtggcagcgacttcgcctacttttacttt
gtctccttcattttcctctgctcctttctgatgctaaatttgtttgtggctgtaatcatg
gataatttcgagtacctgacgcgggactcctccatcctgggtccacatcacctagacgag
ttcatccgtgtgtgggctgagtacgacccggctgcctgtggccgtatcaagtaccgcgat
atgtatgagatgctgctccacatgtccccacctttaggtttggggaagaaatgtccacca
cgaatcgcctacaagcgcctggtgaaaatgaacatgcccatcgctgatgacacctcagta
catttcacctctacgcttatggctctgatccgcaccgctttggagatcaagctggcctca
ggaatcatagcacagcgtctgagggatgctgaattaaagaaggagctgacgactgtctgg
ccaaacctgtctcagaagaccatggatctactggtgacaccccacaaacctaatgagctg
accgtcgggaaggtttatgctgctctcatgatctttgactactacaagcagaaccgagcc
aaaaaactgcagctgcagcaacagcagcacaaagatcagcaggaacctggatcacagaac
aatgtgggcgctcttctcgagcccattctgaatcccatgcaggagaagagcaggagcatt
ttggactgtccatcagacccccagcttctcagacccagctctgccacactaaacaatgga
cacaccctccatgataatccaatcaaaagctcctcatcttgggcagcagagcagaccaaa
gaggttaaagggtcaaagaaacgacccatctccagaggccaatcagaagacatgtccaac
ccaaacactgcccagcaggtgtcagtagaaatgaggaaaatggagaatagtgcaagcaca
attgcacctgctggtttagagggtcaagggcgtgccgtgtccatgcccaaactcaatgca
gagatgcagagaagtcactcacgtcattcaccgggaaccttactaccaacgattcccgac
tcccccctgaggcgctcagcatccacatttgcccctcaacgccctcaggaggaccttgta
aatgactacaatctggaaaaacccaatcaggagcgaccgcaccaccatcaccatcatcac
cgctgccatcaccggagagacagagagaaaaagcagaggtcactggacagatcatctggt
ggccagcccgctggcactggaggcacagcacatgacccagacggggacccctcacttcga
gagagagggcacgaccggggccgttctcacgagaggaaacaccattcatccacagcagag
aaacatcgctactattcatgtgaccgctacggcagccgggagcactttcctgctaaacct
gcgccagccagctgtgccacctctcctggagagggtcaggacgacgccttcaacaagcag
ggcagtggttgggctagaggaagcccagtgttgttaagctcgggctcgagcacgccaagc
cacgggcgcaggcagctgccccagacgcccctgactcctcgcctggctgtagcctacagg
actgccaactcttcccccgtgtcctctgcaatgggtacccaggccaccctaccccctccg
agtcccgtaatgcgcatcagctccgagccgtttcttcagtcccagacggcgctgctgagc
tcgcagcagatcatcaccctcccgacactgtcccagaatgcccttcacaggatgcccaac
gggtaccactacatcatgggcgtgcctgctgggtctgacggtggcagcgacgccacccgg
cacgcctacccaaaagcggaggaggaagaatggtgctag
DBGET
integrated database retrieval system
