Trichomycterus rosablanca: 134335347
Help
Entry
134335347 CDS
T09921
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
trn
Trichomycterus rosablanca
Pathway
trn03030
DNA replication
trn03410
Base excision repair
trn03420
Nucleotide excision repair
trn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134335347 (rfc5)
03410 Base excision repair
134335347 (rfc5)
03420 Nucleotide excision repair
134335347 (rfc5)
03430 Mismatch repair
134335347 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134335347 (rfc5)
03036 Chromosome and associated proteins [BR:
trn03036
]
134335347 (rfc5)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134335347 (rfc5)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
134335347 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
134335347 (rfc5)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
134335347 (rfc5)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
134335347 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
134335347 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_14
RuvB_N
AAA_lid_RFC1
ResIII
AAA_assoc_2
DEAD
AAA_24
AAA_16
PhoH
DUF815
TIP49
nSTAND_NTPase5
AAA_19
AAA_7
AAA_5
ATPase_2
AAA_30
TniB
nSTAND3
AAA_2
Thioredoxin_6
Mg_chelatase
DNAX_ATPase_lid
bpMoxR
Motif
Other DBs
NCBI-GeneID:
134335347
NCBI-ProteinID:
XP_062873941
LinkDB
All DBs
Position
21:4552743..4561862
Genome browser
AA seq
334 aa
AA seq
DB search
MASTSKAPVQTRNLPWVEKYRPQTLDDLISHQDILSTIQKFIKEDRLPHLLFYGPPGTGK
TSTILACAKQLYKNKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQSQMIPRL
EHVIQQESIDITPDGMKAIVTLSTGDMRRSLNVLQSTHMAYEKVTEDTVYTCTGHPLRSD
IANILDWALNKDFSTAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLVKLA
DIEYRLASGTNEKIQLSSMVAAFQAVRDLVVSDS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagcaaagcacccgttcaaacaaggaatttaccatgggttgaaaagtac
agaccacagacactagacgacttgatatcgcaccaggacatcctgagcacaattcagaag
ttcatcaaagaagacaggctgcctcatttgctgttttacggacctccaggaacaggaaaa
acctccaccattctagcctgtgctaagcaactctacaagaacaaggagttcaactccatg
gttttggagcttaatgcgtcagatgaccgtggtatagatgtggttcgaggcccgatccta
agctttgccagcaccaggacaattttcaaaaaggggtttaagttagtgatcctggacgag
gctgatgctatgacccaggatgctcagaacgctttaagaagagtaatcgagaagttcaca
gagaacacccggttctgtctgatttgtaattacctgtcgaagatcatcccagctctgcag
tcacgatgcacgcggttcaggttcggccctctctcccagagccagatgattcccagatta
gagcatgtcatccagcaggagagcattgacatcacacctgatggcatgaaggctattgta
accctgtcaacaggagacatgaggcgatcactgaacgttttacagagtactcatatggct
tatgaaaaagtgacggaagacacggtttacacgtgtacaggtcatccactgcgctccgac
atcgccaacatactggactgggcattgaacaaagacttctctacagcatataaccaaatt
ctgcagctcaaaactctgaaaggtctggcactgcatgatattttgaccgaggtgcatctg
cttatacacagagtcgattttcctccgtctattcgaatgggtttactcgtcaagcttgca
gatattgagtatcgtctggcctctggaactaatgagaagattcagctgagctcaatggta
gctgctttccaggcagtcagagatctagtggtcagtgatagctag
DBGET
integrated database retrieval system
