Trichomycterus rosablanca: 134335618
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Entry
134335618 CDS
T09921
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134335618 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134335618 (smarca2)
03036 Chromosome and associated proteins [BR:
trn03036
]
134335618 (smarca2)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134335618 (smarca2)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
134335618 (smarca2)
Chromatin remodeling factors
BAF complex
134335618 (smarca2)
PBAF complex
134335618 (smarca2)
GBAF(ncBAF) complex
134335618 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
Bromodomain
SnAC
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
134335618
NCBI-ProteinID:
XP_062874253
LinkDB
All DBs
Position
21:complement(17045994..17135270)
Genome browser
AA seq
1566 aa
AA seq
DB search
MSTPIDPSVGMSHPGLSPGAGLSPGPILGPSPGPGPSPGPSPGPPSVPHGIQSQGSGDYP
QESMHPMHKPMEGMHEKSMGEDMHYGQMKSLAMRPHSGMGPPQSPMDQHSQGYMSPHPSP
MGPVPEHVSSPMSGSGPTPPQMSQAQTSPMMSMDPQAMGQQGRGHSAFSPIQLQQLRAQI
LAYKILGRGQPLPENLQLAVQGKRSLPTMQQQPVNTGPYSRPAGMSMPHGSPTAGPCPTP
TMQIHAPSSAPKPWAEGQGGEVPSGTQKLPVPAPSGRPSPAPVQAPTAAQAIPSTSLTLQ
SLPQPQQSQQQQGPGQPSLIFQMQQKQNRITPIQKPQGLDPVELLQEREYRLQARVAHRI
QELENLPGSLPHDLRTKATVELKALRLLNFQRQLRQDVVACMRRDTSLETALNSKAYKRS
KRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSISGKIQKLSK
AVATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVA
NLTTLVYEHKAAQAAKEKKKKRKKKKKEDGENEGIAAIGPDGEPIDESSQMSELPVKVIQ
TETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSDFEEEDEDEGTRAESEEKK
ITDPNSDEVCEKAAKHIIESAKQDVDDEYSVPTGETSSQSYYGVAHAVIERVEKQSPLLV
NGLLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRLNGPYLIIV
PLSTLSNWVYELDKWAPSIVKISYKGTPSLRRSLVPQLRSGKFNVLITTYEYIIKDKHIL
AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLP
TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE
KVEYVIKCDMSAIQKVLYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPY
MFQHIEESFAEHLGYPNGIITGHELYRASGKFELLDRILPKLQATSHRVLLFCQMTSLMT
IMEDYFSYRNFLYLRLDGTTKADDRATLLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADT
VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ
AGMFDQKSSGHERRVFLQAILEHEEQNEEEDEVPDDETLNQMIARQEEEFELFMRMDLDR
RREDARNPKRKPRLLEEDELPSWIIKDDAEVERLTCEDEKEKMFPRGSRLRRDVDYSDAL
TEKQWLRAVEDGNLEEIEEEIRLKKRKRRRHTDKSRHDDGDKAKKKRGRPPAEKLSPNPP
KLTKQMNAIIDTVINYKDGSGRQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERVRNH
KYRSLGDLEKDVMLLCYNAQTFNLEGSQIYEDSIVLQSVFRSARQKIAKEESEDESNDDD
DDDEESEPESKSVKVKIKLGKHDERGQDRNRKRPIRAKAKPVVSDDDSDEEQEENGQSEG
SHTDDE
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccccaattgatccatcagttggaatgtctcatcctggtctctcccctggtgct
ggcctctctccggggcccatcttaggccctagtcctgggcctggcccttctcctggccca
agcccaggaccccccagcgtgccacatggaattcagagtcaggggtcaggagactaccct
caggagagcatgcatcctatgcataagcctatggagggaatgcatgagaaaagcatggga
gaggacatgcactatggccaaatgaaatctctggctatgagaccgcacagtggcatgggt
cccccgcagagtccaatggatcagcacagtcaaggttacatgtcaccgcatccttctcca
atgggacctgttcctgaacacgtttccagccccatgtcaggaagtggtccaaccccaccc
cagatgtcccaggctcagacaagtcccatgatgtcgatggatcctcaggcgatggggcaa
cagggtcgtggtcactctgcctttagcccaatccagctacagcagctccgtgctcagatc
cttgcatacaagatcctgggacgtggacagcctcttccagagaacctgcagctggctgtc
cagggcaagagaagccttcctacgatgcagcagcagcctgttaacaccggcccttacagc
aggcctgcaggtatgtcgatgccccatggaagtcctacagctggcccatgtcccacaccc
accatgcagatacacgctccaagctcagcgccgaaaccatgggcagagggtcaaggtggt
gaggttcccagcggtacccagaagctccctgtaccagcccctagtggcaggccttcccct
gctcctgttcaggctcccactgcagcccaggccatcccaagtacctctctaacattgcag
tcattgcctcaaccccaacagtctcagcaacagcagggccccgggcagccttcacttatt
tttcagatgcagcaaaaacaaaaccgcataacaccgatccagaaaccgcaaggtctggac
ccagtggagcttctacaggaacgagagtacaggttgcaagccagggtcgctcatagaatt
caagagctggagaatttgcctggttctttacctcatgatctaagaaccaaagcaacagtg
gaactgaaagctttgagattacttaactttcagcgccagttacgccaggatgtggtagca
tgtatgcgcagagacaccagtttggagactgcgctgaactccaaggcctataagcgcagt
aagaggcagacactgagagaggctcgcatgactgagaaactggagaaacagcagaagatc
gagcaggagagaaagcgcagacagaaacatcaggaataccttaacagcattctccaacat
gctaaggacttcaaggaataccacagatctatctctggaaagattcagaaactgtccaag
gcagtggccacctggcataccaacacggagagggagcagaagaaggaaactgagagaatt
gagaaagagagaatgaggagactgatggctgaggatgaggagggctacagaaagctgatt
gaccagaagaaggataagcgtctagcctacctgcttcagcagactgatgagtatgtggcc
aacctcactaccttagtgtacgagcacaaggctgcccaggcagccaaagagaaaaagaaa
aagagaaagaagaaaaagaaggaggatggagaaaatgaggggattgctgcaattggacct
gatggcgagcctatcgatgaaagcagtcagatgagtgaacttccagtcaaagtcattcag
acagagaccgggaaagtgctacagggcacagatgcccccaagtccagccagctggaggcc
tggcttgaaatgaaccctggttatgaagtggccccaagatcagacagtgaagaaagtggt
tcagattttgaagaagaggatgaagatgagggcacccgggctgaatcagaggaaaagaaa
attacagatcccaacagtgatgaagtgtgtgaaaaagccgccaaacacatcatagagtct
gccaaacaggatgtggatgatgagtacagcgttccgacaggagagaccagttcacagtcc
tactatggtgtagcgcatgcagtcattgagagagtagaaaagcagtcacctttgctggtg
aacggcttactaaaacattaccagatccagggactggaatggatggtatccctgtacaac
aacaaccttaatggcatcctagcggacgagatggggctagggaagaccatccagaccatc
gccctcatcacatatctcatggaaaacaaaaggcttaatggtccatatctgattattgtg
ccactgtcaacattgtccaactgggtctatgaacttgacaagtgggctccatctattgtg
aaaatttcttacaagggcacaccctctttgcggaggtcactggtgccacagcttcgcagt
ggaaaattcaacgtgctcatcaccacatacgagtacatcatcaaggacaagcacattcta
gccaagattcgttggaagtacatgattgtggatgaaggccatcgcatgaagaaccaccac
tgcaagctcacccaggtgttaaacacacattatgtggccccacgcaggcttcttctcacc
ggaacacctttacaaaacaaactgcccgagctctgggctctgctcaactttctcctgccc
actatcttcaagagctgcagcacctttgagcagtggtttaacgctccattcgccatgact
ggagaaagggtggatctgaacgaagaggaaaccattctgatcatccgcagacttcacaaa
gtgctccgccctttcttgctgcgtagactgaaaaaggaagtggagtctcagttgccagag
aaggtggagtacgtgatcaaatgtgacatgtctgccatccagaaagttctctacaggcac
atgcaagccaaaggaatcctgcttaccgatggctcagagaaagacaagaagggtaaagga
ggagcgaagaccctgatgaacaccatcatgcagctgaagaagatttgcaaccacccttac
atgtttcagcacattgaggaatcttttgctgagcatttaggctacccaaatggcatcatc
accggccatgagctgtatcgagcttcaggaaaatttgagctgttggataggatcctgcct
aagcttcaggccaccagtcatcgtgttctgcttttctgtcagatgacatctttaatgact
atcatggaagattacttctcctaccggaacttcctgtacctacggctagatgggacaaca
aaggctgatgaccgtgccactctgctgaagaagtttaatgaggaaggctcgcagtatttc
atcttcctgctgagcaccagagcagggggcctgggtctcaatctgcaagctgccgacact
gttgttattttcgacagcgactggaatccccatcaggatttacaggctcaggatcgtgct
caccgaatcggacagcagaacgaggtgcgtgttctgcgtctctgcaccgtcaatagtgtg
gaggagaagatccttgctgctgccaaatacaaacttaatgttgatcagaaggtcatccag
gcaggaatgtttgaccagaagtcttctggccatgagcgccgggtttttctgcaggccatc
ctggaacatgaggagcagaatgaggaggaagatgaagttccagacgatgaaacgctaaat
caaatgattgcccgccaggaggaggaatttgaacttttcatgcgcatggacttggatagg
cgtagagaggacgcacgaaaccccaaacgcaaacctcgtctgctggaggaggatgagctg
ccatcctggatcattaaagatgatgccgaagtggagcggctcacttgtgaggacgagaag
gagaagatgtttccacgtgggtcacgcctccgcagagatgtcgattacagcgacgccttg
acagaaaaacaatggctgcgagctgttgaagatggcaacctggaggagattgaagaagaa
atacgattgaaaaaacgcaagcgaaggagacacacagacaaaagtcgacacgacgatggg
gataaggccaagaagaaaagaggacgtcctccagctgagaagctctctcctaatcctccc
aaactcaccaaacagatgaacgctataattgatacagtcattaattacaaagacggatca
ggtcgccaactgagcgaggtgtttgtacagctgccctccagaaaagaactgccagagtac
tatgaactgataaggaaaccagtggatttcaagaaaatcaaggaaagagtgcgcaaccat
aaatacaggagcctgggtgatttagaaaaagacgtaatgctcctttgttacaatgctcaa
accttcaacctggagggatcacagatctatgaggactctattgtactgcagtctgtgttt
aggagtgccaggcagaaaattgccaaagaggagagtgaggacgagagcaatgatgatgac
gatgatgatgaggagtcagagcctgagtcaaagtcagtgaaagtaaagattaagctgggt
aaacatgatgaacgtggccaagacagaaacagaaagcgccccatccgggccaaagccaag
cctgtagtcagtgacgacgacagcgatgaggagcaggaggagaacgggcagtccgagggc
agccacactgatgacgagtga
DBGET
integrated database retrieval system
