Trichomycterus rosablanca: 134335848
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Entry
134335848 CDS
T09921
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134335848 (helz)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
134335848 (helz)
3'-5' decay
Other 3'-5' decay factors
134335848 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
ResIII
UvrD-helicase
PAM2
zf_CCCH_4
PhoH
AAA_16
AAA_22
Mov-10_helical
zf-CCCH_4
Zn_finger_prot
MOV-10_Ig-like
AAA_7
Motif
Other DBs
NCBI-GeneID:
134335848
NCBI-ProteinID:
XP_062874529
LinkDB
All DBs
Position
22:complement(14446186..14511405)
Genome browser
AA seq
1887 aa
AA seq
DB search
MEDRSPQKSCEEAIRSLVRQEYEAAVDHSSEALLALGQCPPAPSTAHYRDRALLYRIAAL
IQLKNYDQADEDCRHVLTEELSKGEWSFRTVLQNMVLDGSLQEVFTILSKALYGEPLNGI
MAKDMTRLKILLSEMETVSSKMVTEQAGDCEEDVHEGWHFRPPPRGVTSSEEYTLCKRFL
EQGLCRYGAQCTSAHSHEELTEWQQRYASRLIRLKQQQEGKHYTENYTEALIEKWINSLS
PDRVLNEYVDGITVEHSSDLSVTVNTKKSSHSWTFSLYCKPARTLHRIALLYDANRPHFS
VMGVCAGDASTLVPQQVCEGGCQEWSGVGLLQNGMDHCLYTVEVAFRTEIFGTFRQTVVF
DFGSEPVLMQRVMVDAASIEDLEHLMQARQQLLMTAKRWDSYCKTIVDFVPNENMELERS
LLTRYQIPLSADQLFTQSVLDKMLTLDNYQSRLHDLLYIEEIAQYKEVSKFNIKVNLQLV
SSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLLLPLSRDPASQG
QPASSKERVYEALIEEKTKDYIFLRICKECCEELNLMQDRELQVELQFQLNRLPLCEMHY
ALDRLRDNSILFPDTSLTPIIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLSIHLPPVL
IIGPYGTGKTFTLAQAVKHILKQPDSRVLICTHSNSAADLYIKDYLHPYVDAGNPHARPL
RVYFRNRWVKTVHPVVQQYCLISGTYLTFQMPTQQDIERHRVVVVTLSTSQYLCQLDLDP
GLFTHILLDEAAQAMECETIMPLALASKTTRIVLAGDHMQLSPFVYSEFARERNLHVSLL
DRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYEGKLMASGKQPPHKDFYPLTFFTA
RGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVSPYADQVFRIRA
ELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDY
GFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICNDNGSLHGITFEQI
KAQLEALELKKTYVLNPLAPEFIPRALRAQQPQVPGKHQHSPPKAKGQLANHTEHFPSEG
FVQPSAAVLMGNPIQAFTPPGGTAPASGKSPSPVQRIDPHTGASILYVPAVYGGNMVMPM
SLPLPWPGYQNRFAMDPRIMSHPAAMAAYNLNLRPAVNRASPVLYGLGQPSPLGIGQLPA
TDKELLQEPNANGKVDVNGKVEHNRLLTPERKAPELKEKQVEPEPVHNKSPEAHASLLYS
STRLLRKDPPTQRPLGFPLPPPHPAFVPHGPPGHLPHYGLPRPLRVQPQPPAYPPSFFSG
HTLGQRPLHSPGLEGLDSGESMVGNAVPDELKNVVRGLPSQHQSHQQQHQQQHQQPHQQP
MRLNSFGEESLDSLLGDSLDGQSCSGLDTLASQQQQQQQHQPPVRLSHWGEPGPFLQGAI
PPFTLAQQLAHMGQPGMRLPHQLLRANWGLGASAEDENRVPMSRYPGLLPQEPYEQREAT
EMPPPQSRLLQYRQVQQPHPPGELPSPPSSSSALSSAPSSSNNHNHTPLQGPFPFSETSC
ELPFQQQQAFSQGSLPLHPEHVPVKYLLPEAHWHHASAQQCPPLPFGLQHGPFTQMQLHQ
HKQQQQLQASHNALHSLEEYEPRGPGRPLYQRRISSSSPQPYSESMVQCKEPQDPAASFA
YSQTDLWPAPGPAPLHNIPCNGASRLVPDRDILVSKVMSGAEEHVQPECAQQPPQPAGLA
PLQQPGHFPALLPSKQIPPDPGGAGPAPAPGHPKTPTMSYASALRAPPKPRCPLPEQAKK
NSDPISLLQDLSIGSSNSSNGYYSYFK
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagaagcccacagaagtcatgtgaagaagccatcagatcgttagtcaggcag
gagtatgaggcagcggtggaccacagctcggaggccctgctggctttgggacagtgtcct
cccgcccccagcacggcccactaccgcgaccgcgctctcctctaccggatagcagctctg
attcagctgaagaattatgaccaagctgatgaggactgtagacatgtgctaacagaggag
ctgagtaagggtgaatggagcttcagaactgtgctacaaaacatggtgttggatggaagt
ctacaggaggtgtttacgattctctccaaagctctgtatggagaaccgctgaatggaatc
atggctaaggatatgaccaggctgaagatactcttgtctgagatggagactgtaagcagt
aagatggtgaccgagcaggcaggtgactgcgaagaggacgtgcatgaaggttggcacttc
cgaccccctcctcgaggagtcaccagcagcgaggagtacactctgtgcaaaaggtttcta
gagcagggtctgtgtcgatacggtgcccagtgtacttcagcccactctcacgaggaactg
accgagtggcagcaacgctacgcctccagactcatccgcctcaaacagcagcaggaagga
aagcattacaccgagaactacaccgaggctctcattgagaagtggatcaactccctttcc
cccgacagagtgcttaacgagtatgtggatggaatcacagtggaacacagctcagatctt
tcagttactgtcaacaccaagaagtcctctcattcttggacattctcactgtactgcaag
cctgcccgcacgttgcaccgcatcgccctgctctacgatgccaaccggccgcatttctcc
gtcatgggcgtgtgcgccggcgacgcctccaccctggtgccccagcaggtctgcgagggc
ggctgccaggagtggagcggagtgggactgctgcagaacggcatggatcactgcctatac
actgtggaggtggccttcagaaccgagatcttcgggaccttccgccagacggtggtgttc
gatttcggctctgagcccgttttgatgcagagggtgatggtggacgcagcgtccatcgaa
gacctggaacacttgatgcaggcccgccagcagctcctgatgaccgcaaagcgctgggac
tcgtactgcaagaccatcgtcgacttcgtccccaacgagaacatggaactggagcgcagt
ctgctcacccgctatcagatcccgctgtccgccgatcagctcttcacccagtcggtgctg
gacaaaatgcttacgctggacaactaccagtctcgcctgcacgacctgctgtacattgag
gagatcgctcagtacaaggaagtcagcaagttcaacatcaaagtcaacctgcagctggtc
tccagcttcatgctgaccggcatctccggcggtgccaagtacgcccaaaacggccagctg
tttgcccgcttcaagctgaccgagaccctgtccgaggacactctcgcgggaaggctggtg
atgaccaaggtgaactcggtgcttctgctacccctgagtcgggacccggctagtcaggga
cagccggccagttccaaggagcgcgtctacgaggccctgatcgaggagaagaccaaggac
tacatcttcctgcgcatctgcaaggaatgctgtgaggagcttaatctgatgcaagacaga
gagctgcaggtggagctacagtttcagctgaacagacttcctctgtgtgagatgcactac
gctctggaccgtctccgggacaacagcatcctctttcccgacactagcctaactcccatc
atcccgtggagccccaacaggcagtgggacgagcagctagaccctcgattaaacgccaag
cagaaggaagccattctggccattaccacccccctgtcaattcaccttcctcccgtgctc
atcatcggcccctacggcacgggcaagaccttcacactggctcaggctgtgaaacacatc
cttaaacagcctgactcacgggtcctcatttgcacccattcgaacagcgcagcagacctg
tacataaaggactacctccatccatacgtggatgcaggaaacccgcacgcaagaccactc
agggtttacttcaggaaccgctgggtgaaaacggtgcatccggtggtgcagcagtattgc
ctgatctctggtacttacctcaccttccagatgcccacccaacaggacatcgagcgccac
agggtggtggtagtcaccctcagcacctcccagtatctctgtcaacttgacctggaccct
gggcttttcacacacatcctgttggacgaggcggcccaggctatggaatgtgagaccatc
atgccgctggctctggctagtaaaaccacacgtatcgtcctggctggagaccacatgcag
ctgagtccgttcgtatacagcgagtttgcgcgggagaggaacctgcacgtgtccctgctg
gatcggctctacgagcactacccatccgagtacccctgcaggatcctgctgtgtgaaaac
taccgctcccatgaggcaatcatcaactacacgtcggatctgttctacgagggcaagctg
atggccagcggcaagcagcccccccataaggacttctaccctctgaccttcttcacagcc
cggggcgaagacgtgcaggagaagaacagcacggcctactacaacaatgctgaggtcttt
gagatcgtggaacgtgtcgaagagatgagaaagaagtggccggtggcctgggggaagctg
gacgagggcagcatcggagtggtgtcgccctacgcagaccaggtgttccggatccgcgcc
gagctccgtaaaaagcgaatgcatgaggtcagcgtggagagagtgcttaacgtgcagggt
aagcagttccgcgtgctgttcctcagcaccgttcgaacccgccacacttgcaagcacaaa
cagacggccatcaagaggaaggagcagctggtggaagactccaccgaggacctcgactac
ggtttcttgtccaactacaaacttctcaacactgccatcacacgtgcccagtccctggtg
gctgtcgtaggagaccccatcgcgttgtgctccgtgggacgctgcagaaagttctgggaa
acgttcatctccatctgcaacgataacggcagtctgcacggcatcactttcgagcagatc
aaggcccagctggaggctctggagctgaagaagacctacgtgctaaacccgctggccccg
gaattcatcccgagagctctgagagcccagcagcctcaggttcccggcaaacaccagcac
tccccacctaaggcaaagggacagcttgccaatcacacggagcactttccgtctgaaggc
tttgttcaacccagcgctgccgtgttaatggggaatcccattcaggcttttactccaccc
gggggaacagcgccagcctcgggtaaatcccctagccccgtgcagcgtatcgaccctcac
accggagccagcatcctctacgtgcccgctgtctacgggggcaatatggtcatgcccatg
tctctgccgttgccatggccgggctaccagaaccgttttgccatggaccctcgcatcatg
agtcacccagcagccatggcagcctacaacttgaacctgcgacctgccgtcaatcgagcg
tctcccgtgctttacggcctgggccaaccttccccgctgggcatcggccagctacccgcc
acagacaaagagcttttacaggagcctaatgctaacggtaaggttgatgttaatggaaaa
gtggagcacaacaggctgctgacccctgaaagaaaagctccagagctgaaagaaaaacag
gttgagcctgagcctgttcataacaaaagcccagaggcccacgccagcctgctctattcc
tccacccgcctcctacgcaaggaccctccgacccagcgccccctcggcttccccctgccc
cctcctcaccctgccttcgtcccccacggccctccgggtcacctgccgcactacggcctt
cccagacctcttcgagtgcagccccagccccccgcctaccctccgtcattcttcagcggc
cacactttgggtcagcgccccctgcactcaccgggcctggaagggttggacagcggggag
agcatggtgggtaacgctgttccagatgaactgaagaatgtcgtgagagggctgccttca
cagcaccagtcacatcagcagcaacatcagcagcaacatcagcaaccacatcagcagcca
atgcgcctcaacagcttcggagaggagagtctcgattcgctgttgggtgactctctggat
ggccagagctgttcaggtctggatactctggcttcccaacagcagcaacagcagcagcat
cagccgccagtacgtctgagccattggggcgagcccgggcccttcctgcagggtgcaatc
cctccctttaccctggcgcagcagctggcacacatgggccagccgggcatgcggcttccc
catcagcttctccgtgccaactggggcctgggtgctagcgctgaggacgagaacagagtg
cccatgtccaggtaccccggtctgctcccccaggagccatacgagcagcgagaagccact
gaaatgccgccccctcagtcccgcctgctacaataccgccaggtgcagcagccccaccct
ccaggagagctaccttccccaccctcctcctcatccgccctgtcttctgctccctctagt
tccaacaatcacaaccacacccccctccagggacctttccctttctcggagaccagctgt
gagctcccttttcaacagcagcaggccttcagccagggctccctcccccttcatcccgag
cacgttcccgtcaagtacctcttaccagaggcccactggcaccatgctagcgcgcagcag
tgcccgccgctgccgttcggcctacagcacggcccttttacacagatgcagctacatcag
cacaaacagcaacagcagctccaggcctcacacaatgccctccacagtctagaagagtat
gaaccacgggggcccggacggcccctttaccagaggcggatctcctccagctctcctcag
ccgtacagcgagagtatggtgcagtgtaaggagcctcaggatcccgcggcctccttcgcg
tattcccaaacagacctgtggcccgccccgggccccgctcctctacataacattccgtgc
aatggagccagccgtctcgtccctgacagggatattttagtttcaaaagtgatgagcggt
gcggaggagcacgtccagcccgagtgcgcgcagcaacctcctcagccggccggcctcgcg
cctctccagcagcccggacacttcccagccctcctgcccagcaagcagatacccccggac
cccggaggagcgggccccgcgccagcccccggccaccccaagaccccgaccatgtcgtac
gccagcgccctccgagcccctccgaaacctcgctgcccgctgcccgagcaggccaaaaag
aacagcgacccgatctcattgttacaggaccttagcatagggagttccaacagtagcaat
ggctattactcatattttaaataa
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