Trichomycterus rosablanca: 134336059
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Entry
134336059 CDS
T09921
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03020
RNA polymerase
trn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134336059 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
134336059 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134336059 (polr2b)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134336059 (polr2b)
Enzymes [BR:
trn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134336059 (polr2b)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
134336059 (polr2b)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
134336059 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
134336059
NCBI-ProteinID:
XP_062874799
LinkDB
All DBs
Position
22:complement(21261588..21272931)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSIIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKREECQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagatgaagacatccagtatgatgaagacgatgatgagatcacccctgat
ctgtggcaggaagcctgctggattgttatcagttcctattttgacgagaagggtttggtg
cgacagcagctggattcattcgatgaattcatacagatgtctgtacagcgtatcgtcgag
gatgcgccgcccatagacctacaggccgaggcccagcacacctcaggagaggtggaggaa
ccgcctcgatatttgctgaagttcgaacagatttacctgtccaagcccacacactgggag
agagacggcgctccctcacccatgatgcccaacgaggcacgactccgaaacctcacgtac
tccgctcccttgtacgtggacattactaagactataataaaggagggagaggagcagctc
cagactcaacaccagaaaaccttcatcggcaaaattcccatcatgctccgttccacctac
tgcctgctcagcggcctgacggaccgtgacctctgcgagcttaacgagtgcccgctcgac
ccgggcggttacttcattatcaacggctccgagaaggttctgatcgcgcaggagaagatg
gccaccaacacggtgtacgtgttcgccaagaaggactccaaatatgcctacacgggcgag
tgcaggtcctgtctggagaactcgtccagacccaccagcaccatctgggtcagcatgatg
gccagaggaggacagggagtgaaaaagagcgcgatcggtcagagaatcgtctccacccta
ccctacatcagacaggaagtgcccatcattatcgttttcagagccttgggattcgtgtcg
gatcgagacatcctggagcacatcatctacgacttcgacgatccagaaatgatggaaatg
gtgaaaccctctctggacgaggcgttcgtgatccaggagcagaacgtggccctgaacttc
atcggctccagaggggccaaaccgggagtcaccaaagagaagagaattaaatacgccaag
gaggtgctgcagaaagaagtgctgccccacgtgggcgtgtccgacttctgcgagaccaag
aaggcctactttttagggtacatggtgcaccgactgctgctggcagctctgggcagacga
gagctggacgacagggatcattacggcaataaaagactggatctagccgggccgctccta
gccttcctgttccgagggatgtttaaaaacctcctgaaggagatcaggatctacgctcag
aagttcatcgaccggggaaaagacttcaacctggagctggctatcaaaacacggatcatc
tctgacggcctgaagtactcgctggccaccggcaactggggcgacgtcaaaaaagctcac
caggcccgagccggcgtctctcaggtgttaaacagactgacgttcgcctccacgctctct
cacctgcgccgcgttaactcgcccatcggccgagacggaaaactggcaaagcccaggcag
ctccataacaccctgtggggcatggtgtgccccgccgagacgcccgagggtcatgccgtc
ggcctggtgaagaacctggcgctcatggcgtacatctctgtgggttctcagccctcgccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcgccagccgcc
atcgcagacgctacgaagatctttgtgaacggctgctgggtggggatccataaagacccc
gagcagctgatgaacacgctgaggaagctcaggaggcagatggacatcatcgtgtctgag
gtgtcgatgatccgtgatattagggagcgagagatccgaatttacaccgacgccgggcgc
atctgtcgcccgctgctcatcgtggagaagcagaagctgctgctgaagcggcgccacatc
gatcagctgaaggagcgagagtacaataattacagttggcaggacctggtagcgagtggt
gtggtagaatatatcgacacgctggaagaggagactgtgatgctggccatgaccccagat
gaccttcaggaaaagggtgtggcctactgctccacctacacgcactgtgaaatccacccg
tccatgatcctgggagtgtgtgcgtccatcatacctttccccgatcacaaccagtctccc
aggaacacgtaccagtctgctatggggaagcaggctatgggcgtgtacatcaccaacttc
cacgtgcgtatggacaccctggcacacgtactctactatccacagaaacctctggtcacc
actcgctccatggagtacctgcggttcagagagctgccagcaggcattaactccatcgta
gctattgcatcgtacacgggatacaatcaggaggattccatcatcatgaaccgctcggct
gtggaccgaggcttcttcaggtctgtgttctatcgctcgtataaagaacaagaatcgaag
aaagggttcgaccaggaggaaatcttcgagaaacccaaacgtgaagagtgtcaaggtatg
cgtcacgccatctacgacaagctggacgacgacggcctgatcgcgccgggcgtgcgcgtg
tccggcgaggacgtgatcatcggtaaaacggtcaccctgcccgaaaacgacgacgagctg
gacagcaccaacaagcgctacaccaagagggactgcagcaccttcctgcgcaccagcgag
accggaatcgtagaccaggtcatggtcactctcaaccaagagggctacaagttctgcaag
atcagagtgcggtcggtgcgaatccctcagatcggggacaagtttgccagtcgacacggg
cagaagggaacctgtgggatccagtacaggcaggaggacatgccgttcacatgtgaagga
atcaccccagacatcatcatcaacccccacgccatcccctcccgaatgacagtcggtcac
ttgatcgagtgtctgcaggggaaggtctctgcgaacaaaggagagattggtgatgccaca
ccgtttaacgatgccgtgaacgtgcagaaagtgtccaacctgctctctgaatacggctac
cacctcagaggaaacgaggttctgtataacggtttcacggggcgtaagctgacctcgcag
atcttcctcggacccacctactatcagcgcctcaagcacatggtggacgacaagatccac
tcacgagcgcgaggccccgtccagatcctcaaccggcagcctatggagggcagatcacgt
gatggaggtctgcgtttcggagagatggagcgagattgtcagatcgctcacggtgccgct
cagttcttgagggagcgtctgttcgaggcctccgatccataccaagtgcacgtgtgtaac
ctgtgtggtctgatggccatcgccaacacgcgcacacacacctacgagtgccggggctgc
cgcaacaaaactcagatctcgctggtgcggatgccgtacgcctgcaagcttctcttccag
gagctgatgtccatgagcatcgccccacgcatgatgacgtcctaa
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