Trichomycterus rosablanca: 134336060
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Entry
134336060 CDS
T09921
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03030
DNA replication
trn03410
Base excision repair
trn03420
Nucleotide excision repair
trn03430
Mismatch repair
trn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134336060 (pold1)
03410 Base excision repair
134336060 (pold1)
03420 Nucleotide excision repair
134336060 (pold1)
03430 Mismatch repair
134336060 (pold1)
03440 Homologous recombination
134336060 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134336060 (pold1)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134336060 (pold1)
Enzymes [BR:
trn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
134336060 (pold1)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
134336060 (pold1)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
134336060 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
134336060 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
134336060
NCBI-ProteinID:
XP_062874800
LinkDB
All DBs
Position
22:complement(4739466..4750355)
Genome browser
AA seq
1104 aa
AA seq
DB search
MDFKRRNGGPALGSSQPKKGKPGPEWEDGPSHFEEELALFDEMDMEVESGEGQAGHHVIP
VGDLFSADLNPRWRRPHAPVLHPDKDNLIFQQIDLDYYLGSAVAGMPGQIQGKVPIVRMF
GVTDDGNSVCCHIHGFAPYFYIPAPTGFTRSHLSEFQKELNSVVLKDMRSNKDNISVTVL
AVDITRKESMYGYHGKRILDFLRITMAMPRLVAPAKRLLEQGFKFANFPIQNYSTYEANI
DFEIRFMVDSDVVGCCWIELPKGKYKLRKEKSSGETDSKDPGKVSLCQYEVDVGWTDLIS
HPAEGDWQRIAPLRVLSFDIECAGRKGVFPEAEVDPVIQIASMVQRQGEKEPFIRTVFTL
QSCASIVGSQILCFTQEKQLLQSWAEFVRTVDPDIITGYNIQNFDLPYLLNRSAALKVNF
FPYLGRVRGIKSVIKDSNFQSKQMGRRENKSVNMEGRVQFDLLQVLLRDYKLRSYTLNAV
SFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMAR
VTGVPLTYLLSRGQQIKVVSQLLRHAVKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSIP
ITTLDFSSLYPSIMMAHNLCYTALLQKDQAEKLGLSSDDFIKTPTGDYFVKSSVRKGLLP
EILENLLSARKRAKTDLKKETDPFRKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEIS
QSVTGFGRQMIEQTKQLVESKYTVANGFPADAKVIYGDTDSVMVKLGVDTVQDAMKMGKE
AAEWISSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSSAEHHDKMDCKGIETVRRDNC
PLVANLINMCLQKTLIDRDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAGK
QAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTAYY
LEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCIGCKA
VLKTDAAVCDFCKKKESELYQKEIAHLSSLEEKFSRLWTQCQRCQGSLHEDVLCTSRDCP
IFYMRKKVQKDLGDQEKLVSRFGW
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggattttaagaggcgcaatggaggacctgctttgggctcctctcagcctaaaaagggc
aaaccaggcccggagtgggaggatggcccatctcactttgaagaggagcttgccctcttt
gatgaaatggacatggaggtggaatctggggagggccaggcaggtcatcatgtcatccca
gtgggtgacttattctcggctgatctgaaccctcgctggcgtcggccacatgcgccggtt
cttcatccggataaagacaatctgatattccagcagattgacttggattattacctgggt
tctgcagtggccgggatgccaggacagattcaggggaaggttccgattgttcgtatgttc
ggggtgacggacgatgggaacagtgtctgttgtcatatacatggatttgcaccatatttt
tacatccctgcaccgactggctttactagatctcacctgtcagagttccagaaagagttg
aactcagtagtgctgaaagacatgcgctcaaacaaagacaacatatcggtcactgtgctg
gcagtggacatcacccgcaaagaaagtatgtatggctaccatggcaagcgtattttggac
tttcttcgaatcaccatggcgatgccacgtcttgttgccccagcaaaacgcttactggag
cagggctttaagtttgcaaactttcccattcagaactattctacctacgaggccaacatt
gacttcgagatcaggtttatggtggacagtgatgtagtgggctgctgctggattgaacta
cctaaaggaaagtacaaactcagaaaggaaaagagttccggggagaccgactccaaagat
ccaggaaaggtgtcattgtgtcagtatgaggtggatgtgggatggactgatctgatcagt
cacccagcagagggagactggcagagaatcgctcctctcagggtcctcagctttgatatc
gagtgtgctggcaggaaaggtgtgtttcctgaagctgaggtggaccctgtgattcagatt
gcctccatggtgcagcgtcagggagagaaggagccgtttatacgcaccgttttcaccttg
cagagctgcgctagtatagtaggctctcagattctctgcttcactcaggagaagcagcta
ctgcagagttgggcagagtttgtaaggacggtggatcctgatatcattacaggctacaat
attcagaactttgacctgccgtacctcctcaacagatctgctgctctaaaggtgaatttt
tttccctacctgggtcgggtgcgaggaatcaagtctgtcataaaggactccaacttccag
agcaaacagatgggccgccgagaaaacaaatctgtcaacatggaggggagagtgcagttt
gaccttctgcaggtgctgttaagggattataaactgcgctcgtacaccctcaacgctgtc
agtttccacttccttcaagagcagaaggaagacgtccagcactccattatcacagatctg
cagaatggaaatgagcagacaaggagacgtttggccgtgtactgtctgaaggatgcctac
ctaccgctgcgcttgctgcagaagctgatgtgtgtcattaactacatggagatggccaga
gtcacaggcgtgcctctgacctacctgctctcccgaggccagcagattaaagtcgtgtca
cagttactgcgacatgcggtgaagcaggacttggtaatgcctgtggtaaagacggaagga
ggagaggattatactggagccaccgtcattgagccagagaaagggtactacagcatccct
ataaccactctggatttctcctctctgtacccgtcaattatgatggcgcataacctgtgc
tacactgcactgctgcagaaagaccaggcagaaaaactgggtctctcttcagatgacttt
atcaagacgcctacaggtgattattttgtgaaaagctcagtgagaaagggtcttctccca
gagattctggagaacctgctaagtgcccgcaagagggcgaagactgatttgaagaaggag
actgacccatttaggaagcaggtgctggatggcagacagttagctctgaagatcagtgcc
aactctgtgtatggttttaccggggcacaggtgggcaaactgccctgcctggagatctca
cagagtgtaacaggctttggtaggcagatgattgaacagaccaaacagcttgttgaatct
aagtacactgtcgctaatggctttcctgcagatgccaaggtcatctatggagacacagac
tctgtaatggtgaaactgggtgttgacaccgtgcaggatgctatgaaaatgggaaaagag
gccgccgaatggatttcttctcacttcgttcccccaatcaaactagagtttgagaaggtg
tactatccctatttgctgatcaataagaagaggtatgcagggctttacttctcctccagt
gcagagcatcatgataagatggactgcaagggaatagagactgtgagacgagacaactgc
ccccttgtggcgaaccttatcaacatgtgcctccaaaagactctcatagacagagatcct
gatggcgctgtagctcatgctaaagaggtgatctcggacctactgtgtaatcgtattgac
atcagtcagctggtcattaccaaggagctgactcgcacagcgcaggagtacgctggtaaa
caggcccatgtggaacttgcagagaggatgcgaaagcgcgatgccggaagtgcccctaac
cttggagatcgggttccatacgtcatcattaaagcagccaaaggagtggcagcgtacatg
aagtccgaggatccgatttatgtgctagagaacaatatacctatcgacacggcgtactac
ctggagcaacagttgtctaaacctctactgcgcatctttgagcccatactgggagagacc
aaggctgagagtgtattactcaagggagatcacacacgctgtaagactgttctgacctct
agggtaggtggcctcatggcctttgcccagaagcgcagcacatgcatcggctgcaaagca
gttctcaaaaccgacgctgctgtatgtgacttctgcaagaagaaagagtctgagctctat
cagaaagagattgctcacctctcatccctggaagagaaattctctcgtctttggactcag
tgtcagcgctgtcaaggttccctgcatgaagatgtgctgtgtaccagtcgagattgtcca
atcttctacatgagaaagaaggtacagaaagacctgggtgaccaggagaagctcgtctca
cggttcggctggtga
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