Trichomycterus rosablanca: 134336302
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Entry
134336302 CDS
T09921
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
trn04121
]
134336302 (rbbp6)
Enzymes [BR:
trn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134336302 (rbbp6)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
U-box type E3
134336302 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-RING_2
zf-RING_UBOX
zf-RING_5
SR-25
zf-C3HC4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
134336302
NCBI-ProteinID:
XP_062875099
LinkDB
All DBs
Position
22:complement(452359..470299)
Genome browser
AA seq
1765 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGMHITVSELKKQIMGRERLKATDCDLQITNAQTKEEYTDD
AALIPKNSSVIIRRIPIGGVKATSKTFVIDRSEHSGGSSKAIDDVPSITLAQLSKTANLA
EANASEEDKIRAMMSQSNHDYDPIHYTKKLVGPPPPNYTCFRCGKTGHYIRNCPTNGQDK
SFEAPQRIKRSTGIPRSFMMEVDDPSTKGAMLTNTGTYAIPTIDAEAYAVGKKEKPPFLP
QDRSSSSDDDDPVPDELLCLICKDLMTDAVVIPCCGNSYCDDCIRTSLLESEEHVCPTCN
QSEVSPDALIANKFLRQAVNNFRNETGYTKRMRKSAAQSSAPTQKPQPQPRLLRPVQALK
PLNSRQQDPLRANTPPQVPIAAAPVPPPAVPPPTSVAQSPAPTAPPTPATTPPPATPPAA
GTPSATPPGDEASSVAERGDTPPPGPPSPPQLPKQDDDAAAAMPRDPKVLGASPVLSESL
LPTLVIPKGHHVPVLGHPPSHAHPPHPVPPPHPVPHPRSGPQRPNAPRLPPSRPVWDQPS
GRSRPPHDDRHQRAPAPPVQPPPVAPTLYPPNIFPPPQHAIPHPPGIVPPPYPLPYPQGQ
QPVPPFSMPPPGFPPAPAGVPNPWAPPGTQPPIATPPIPAVPPSHFLSEEEFYRKQRRLK
EEEKSKLDEFTNDFAKELLEYRKIQKDRRRSYSRSKSPYRSSYSGSSYSYSKSRSRSPRS
YSRSVSRSRSRSRSRSRSRSYTPYSRRGRGRSRSYRSRSRSPAYHRSRTRSPSYRGRDGA
GMSGAIYRSRSRSPIYRTHSPAKKIPPGAQLEERKYPASRYREAPVYDAKAYYGRAVDES
DPYERERYLKWEREYREWYEKYYKSYSAQQNAQIRGRGPGASKPYSPERFAPPRPRDNSP
YARGRRDDYPPHAQGHAAHPRSRPQTYQERCAEKYGQLNANSAPVSRGVNKEPPKSVKER
EPTSSDAVDSKTLKHKKHRRKRKGEEGDGFGHSDSVDESRKDERTKGDSMLMNSSRDDAT
PVRDEPMESAATTYKSSSDKEKKDKTKSKTESKVKRKVESSTSKKDTSTTKSSKPSKDKD
PAPARERVTSSEPPIKRIKEEPAQKPDDGKSHASESKLMLPRKLMQSRSIKPKDEPKVKK
ESVKDSAKTERPAKPKAEKPLKPDEKHPNRSSEAKPEKRRRRDEKPPAKDPEVPPGKSPR
VEPAETAKVSPPKPKSKPESEKQPEREKPAIPSLMDIKPEPVRKIKLNREIGKRIGSTDR
PSSEETGSAGKNRPDQKSKLKVRRRVHGPDASGSMLVDYTSTSSTGGSPIRRLEEKADLR
KTVVKTLEEYTNDSSTPAEDEIVMIQVPRSKWEKEDFESEEDENKALLPTSTSSSSSSSV
PGREKNSKSNSGAARPDAPDADRDAPRDSAARDATRDAPRDSATRDSAPRDSARDDQPEV
KPAKDPSSDPEKEKESERERDRAKERERSDSERRKPGSVNQERGSDHGSERSSSSQSSRD
RAAAASSSRKASSRDHNADDRKPEHRSSARDHSESRKPKEPIRRKDSPPPPAKDGNKRVS
QEPRRSEQSPPGDRKVASRVEKKPVSESDKPRDGTKPSAKDKEPAASRTNQSADSKHDSD
GKTKPPLARSARLPSDLTRETDESTFVPDYSESDSETSDAENKAEPKDKQQESSASPAHS
RSPSPSGSHAHSSSPSSPDSRKKKKDKKEKKEKKKHKRHKKHKKHKKHGANESESEGGKA
PKHKKKKSKKNKEKERDERGKSPDQ
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgttcattataagttttcttctaaactgaactatgacacggtgacttttgac
ggcatgcacatcaccgtgtccgagctgaagaagcagatcatgggccgagagaggctgaag
gccaccgactgcgacctgcagatcaccaacgcccagactaaagaagaatacacagatgat
gccgctctaatccctaaaaactcctcagtcatcatcagacgaattcccatcggtggagta
aaagcaaccagcaaaacatttgtcattgatcggtccgaacactcgggtggatcttcaaaa
gccattgatgatgttccctccattactctggcccagctctccaagacggccaacctggcc
gaagccaacgcctcggaggaggataagatccgggccatgatgtcacagtccaaccacgat
tacgaccccattcattacacgaagaagctggtgggtcctcctcccccgaactacacctgc
ttccgctgcggcaagaccggacactacatcagaaactgccccaccaacgggcaggataaa
agtttcgaggcgccacagcggattaagaggagcactgggattccgcgtagcttcatgatg
gaggtggacgatccgagcactaagggagccatgctgaccaacacggggacgtacgccatc
cccaccatcgacgcggaagcgtacgcggtggggaagaaagagaagccgccgttcctccct
caggaccgctcctcctcctcggacgacgacgaccccgtccccgacgagctgctgtgcctc
atctgtaaggatctgatgacggacgcggtggtgatcccctgctgcgggaacagctactgc
gacgactgtatcaggaccagcttgttggagtcggaggagcacgtctgtcccacctgcaac
cagtccgaagtgtcgccggacgccctgatcgccaacaagttcctacgccaggcggtgaat
aacttcaggaacgagacgggctacaccaagaggatgcgcaaatccgccgcccagagctcc
gcccccacccagaagccccagccccagccccgcctcctacgccctgtccaggccctcaaa
cctctcaactcccgccagcaggacccgctccgtgccaacacgcccccgcaggtccccatc
gctgccgcgcccgtccctcctcccgccgtccctccgcccacttcggtggcacagtcgccc
gctccgaccgccccgcccacccctgcgacgacgccccctccggcgacgccgccggccgcg
ggcaccccctcggcgactccccccggagacgaggcttcctccgtcgccgagcgcggtgac
accccgccgccggggccgccgtcgccgccacagctacccaagcaggacgacgacgccgct
gccgccatgcccagagaccccaaggttctgggagcttctcctgttttatccgagtctctg
cttccaactctagttattccaaagggtcaccacgttccagtgcttggccatcctccgtct
cacgctcatcctcctcaccccgttcctcctcctcaccccgttcctcaccccagatcagga
ccgcagaggcccaatgcaccgagactgccgccatcccgacccgtgtgggatcagccttca
ggtcggagcaggcctccacacgacgatcgacaccagagggcgccggctcctccggtccag
cctcctcctgtcgctcccaccctttacccacccaatatcttccccccgcctcagcacgcc
atcccccacccgcccggcatcgtgcccccgccgtaccccctgccgtaccctcaggggcag
caacccgtccctcctttcagcatgcctccaccgggtttccctcctgcacccgccggcgta
cccaacccctgggcaccaccgggtactcaaccgcccatcgccacccctcccataccggcc
gtaccaccgtcacacttcctgtccgaggaggagttctacaggaaacagcgccgcctcaag
gaagaggagaagtccaagctggacgagttcacgaacgactttgccaaagagctgctggag
tacagaaagatccagaaggacaggaggagatcctactccaggtccaaatctccgtatcgc
tcgtcctacagcggatcatcctactcttactccaagtccagatcccgatccccacgttcc
tactcccgctctgtctcccgctccagatcccgctcacgttcccgctctcgctccagatcc
tacacgccgtactcgcgcagagggcggggccgaagccggagttaccgctccagatcccgc
tctcccgcgtaccatcgctctcgcactcgctctccctcctacagggggcgagacggagcg
gggatgagcggcgccatttatcgctcacggtccagatcccccatctataggacgcacagt
cccgccaagaagatcccccccggggctcagctagaggagcggaagtacccggcgagcagg
tacagggaggctcccgtgtacgacgccaaggcttactacggccgagcggtggacgagagc
gacccgtacgagcgcgagcgctacctgaagtgggagcgcgagtaccgcgagtggtacgag
aaatactacaagagctacagcgcgcagcagaacgcgcagatcagggggcgaggcccgggg
gccagtaagccttattccccggagcgcttcgcaccccccagaccgagagacaactcgccg
tacgccaggggccgccgagacgactacccgccccacgctcaggggcacgccgcccacccg
aggagtcgcccccagacgtaccaggaacggtgtgccgaaaagtacgggcaactcaatgcc
aacagtgcacccgtcagtagaggggtgaacaaagagccgccgaagagcgtcaaagagcgc
gagccgacgtcgagcgacgcggtcgactccaaaactctgaaacacaagaaacacaggagg
aagaggaagggcgaggaaggagacggcttcggccactccgactccgtggacgagtccagg
aaagatgagcgcaccaagggcgactccatgctgatgaactcgagccgggacgatgccacg
ccggtgagggacgagcccatggagagcgccgccaccacctacaagagttcctcagacaag
gagaaaaaggacaaaaccaaaagcaagacggagagcaaggtcaagcgcaaggtcgagagc
agcacgtcaaagaaagatacgtcgaccaccaagagctccaagcccagcaaagacaaagac
ccggctccggcacgggagagggtcacgtccagcgaaccgcccatcaaacgaatcaaagag
gaacccgctcagaaacccgacgacggcaaatcgcacgcgtccgagtctaaactcatgctg
ccccgcaagctgatgcagtccagatcgatcaaacccaaggacgaacccaaggtcaagaaa
gaatcggtcaaggactctgcgaagacggaacgacctgccaagcctaaagcggagaaaccc
ctcaaacccgacgagaaacaccccaacagatccagcgaggccaagcccgaaaagcgcaga
cggagagacgagaagccgcccgcgaaagaccccgaggtcccgcccggtaaatcgccgcgg
gtggagccggccgagaccgccaaggtctcccccccgaaacccaagtccaagccggaaagc
gagaagcagcccgagagggagaaaccagccatcccttccctgatggacatcaagcctgaa
cccgtccggaagatcaaactcaaccgcgagatcgggaagaggatcggcagcaccgaccgg
ccttcctctgaggagaccgggagcgctgggaaaaaccgaccggaccagaagtcgaagctc
aaggtgcgccgcagggtgcacggaccggacgcctccggatccatgctggtcgattacacc
agcaccagctcgacgggtggcagccccatcaggaggctggaggagaaagctgatctgagg
aagacggtggtgaagacgctggaggagtacaccaacgacagctccaccccggccgaggac
gagatcgtcatgatccaggtgcctcgctccaagtgggagaaggaggacttcgaatcagag
gaggatgagaacaaagccctgctccccacctccacctcctcctcctcctcctcgtctgtt
cctggaagggagaagaattcaaagtcgaactctggtgctgcgagaccagacgctccggac
gctgacagagacgcccccagagactccgccgccagagacgccaccagagacgcccccaga
gactccgccaccagagactccgcccccagagactccgccagagacgatcagcctgaagtc
aaacctgccaaagatccgtccagtgatccggagaaggagaaggaaagtgagagggagcga
gaccgggccaaggagagggagcggagcgattcagaacgacggaagccggggtcagtaaat
caggagagaggaagtgaccacgggagcgagagaagctcctcctcacagtcgtctagagat
cgagcggcggcggcgtcatcgtccaggaaagcgtccagtcgtgaccacaacgcggacgac
aggaagccggagcaccgcagcagcgcgagagatcactccgagtcacgaaagccaaaagaa
ccaatcaggaggaaggactcgcctccgccgcctgccaaggatggcaacaaacgtgtctcc
caggagccgagacggagcgagcagagcccgcccggcgacaggaaggtggcgtctcgcgtg
gaaaagaaacccgtctcagagagcgacaagccacgagacggaaccaaaccctccgccaag
gacaaggaaccggcggcgtccagaaccaaccagagcgccgactccaaacacgactccgac
ggcaaaaccaaacccccgctggcacgctccgcccgcctgccctccgacctgacgcgggag
accgacgagtccaccttcgtccccgactacagcgagagcgacagcgagacctcggacgcc
gagaacaaggcggagcccaaagataagcagcaggagagcagcgccagccccgcccacagc
aggagccccagtccgtccggcagccacgcccacagcagcagccccagctcgccggacagc
cgcaagaagaagaaggacaagaaggagaagaaggagaagaagaagcacaagaggcacaaa
aaacacaagaagcacaagaagcacggcgccaacgagtccgagtctgaggggggcaaagcg
cccaaacacaagaagaagaaatcgaaaaagaacaaagagaaggagcgggacgagaggggc
aaatcacccgatcagtaa
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integrated database retrieval system
