Trichomycterus rosablanca: 134336339
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Entry
134336339 CDS
T09921
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134336339 (casc3)
03015 mRNA surveillance pathway
134336339 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134336339 (casc3)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134336339 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
KH_KhpA-B
Motif
Other DBs
NCBI-GeneID:
134336339
NCBI-ProteinID:
XP_062875150
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All DBs
Position
22:13533682..13572287
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AA seq
746 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESVSGSDSVRSGSSGGKNRPRAPEPVESPAIRPTAKSDPES
ECESEDGVGEAVLSDYDSAEPENGSHSEGGEDDEVEVPEHFADEDSARPAAEQKAAADGP
AKEIGEENEEVEVEVEEVEEEDERAIIDVKAEQKGNLAGERQSGDGQESTVDPENKSAGK
AGQKLDDDEDRKNPAYIPRRGLFFEHDVRGQAQDEERPKGRHRKLWKDEGRWEHDKFRED
EQAPKSREELIALYGYDIRNGVGNRDSRPFKLRKPRYTGPLNQEGKRQYRDNEKPARSSW
QGAAPNIRSAPPAAEPLQSNATSAPRPQNRPPSRTFQNSRRPEIRTHGKVTPRPQAPENE
RAPRLRARGPHGPSQHTRRSPQDDEEEEEGEIPAVTTTYTAHHYKTEREMTSTLQQREES
GTTEEQQMGTPSTVMDASPPPEKPVEKKSYSLARRSRARPSDLSKQASLEEAALPSQGMP
ATAKSESWQAHGDTGTESGLSRLDQGLARLSLAGQNWTQSPPSYLRPEMRGIPSSIHMGG
AGPPQYSNMEDMGVGAGRAKRYSSQRQRPVPEPAPMHIGLMEGHYYEPMSFQGPIYTHGD
NSAAMPPQGLLVQPEMHLTHPTHPGLHPHQSGGPLPNPALYAAPPVSISPGQPPPQQLLP
PPFYPPPGVMTFSNTNYPYPAGATLPHMYPNPQAQSQVYGGVTYFDTVQQQAQPKPSPPR
RTSQPVTVKPPPPEDQNRKQSEEVRS
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgaagacgaagacggcgcgcttctcaggatagcgaggacgacgacgag
tcagtgtccggctcggatagcgtcaggtcgggttcctccggcggaaagaaccggcccaga
gcacctgaacccgtggagagtccggccatccgccctaccgccaaaagcgacccggagtct
gagtgtgagagtgaagatggtgtaggtgaagccgtactctctgattatgacagcgccgag
ccggagaacggctcgcattcggagggaggagaggatgatgaggtcgaggtgcccgaacac
ttcgctgatgaagattctgcacgcccagcagcagagcaaaaagcagcagcagatggtcct
gcaaaagaaataggagaggagaatgaggaggtggaggtggaggttgaggaggtggaggag
gaggacgaaagagcaataatagatgtgaaggcagagcagaaaggcaacctagcaggagag
cggcagagtggagatggccaggaaagcacggtcgatcccgagaataagtcagctggtaaa
gccggccagaagctggacgatgatgaggacagaaagaatccggcctacattcctcgcagg
ggtctgttctttgaacatgatgtgagaggtcaggcccaggatgaggagagacctaagggc
aggcataggaagctgtggaaggacgagggtcgttgggagcatgataagttccgggaggat
gagcaggcacctaaatctcgtgaggagctcattgctctgtacggttatgatattcgcaac
ggcgtcggaaacagagattccagaccgttcaagctgcggaaacccagatacactggtcca
ttaaaccaagagggcaagagacagtacagagacaatgagaaaccagctcgctcctcttgg
cagggtgcagctcccaatatccggagcgccccacctgctgccgagcccctgcagtcaaat
gcaacaagtgccccccgcccccaaaacagacccccttctcgcaccttccagaacagccgc
cgaccagaaatcaggactcacggtaaagttactccccgaccccaagctccagaaaacgag
agggcgcccaggcttagagcccgaggccctcacggaccctctcagcatactcgacgcagc
ccacaagacgatgaagaagaagaagagggtgagattcctgccgtcaccaccacctacacg
gctcaccactacaagactgagcgagagatgacgagcacgttgcagcaaagggaggaatcc
ggaaccacggaggagcagcagatgggtacacccagcacagtcatggatgcatcgccgcct
ccggagaagccagtggagaaaaagtcgtattccctggcgcgcaggagccgcgccaggccc
tcggacctcagcaagcaggcctcgctagaggaggcggcgctaccctcacagggtatgcct
gccactgccaagagtgaatcgtggcaggctcatggcgacacgggtacggagagcggcctc
tcaaggcttgatcaaggtttggctcgactaagcctggctgggcaaaactggacccagagt
ccaccctcgtatctgcggcctgagatgaggggcatccctagctcaatacatatgggaggt
gcaggccctcctcaatatagcaacatggaagacatgggtgttggagccggtcgggctaag
cgctattcctcccagaggcagaggccggttcctgaaccagcaccaatgcatatagggctg
atggagggccattattacgaacccatgtcgttccagggaccaatttacacacacggcgac
aattctgctgccatgccaccacagggcctactggtacaaccagagatgcaccttacccac
ccgacacaccccggcttgcacccccaccagtcaggaggccccttacctaaccctgcgctt
tacgctgctccgcctgtctcaatctcaccaggccagccacccccacagcaactgctacct
ccccctttctaccccccaccaggtgtcatgacattcagcaacaccaactatccctaccct
gctggagctacactaccccacatgtaccctaacccacaggctcagtcacaggtgtatggt
ggagtgacgtattttgacacggtacaacaacaggctcagccgaaaccctcaccaccgcgg
cgcacctcgcagccggtcacagtaaaaccccctcctccagaggaccagaataggaagcag
agtgaggaggtgcgttcctag
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