Thermomicrobium roseum: trd_0093
Help
Entry
trd_0093 CDS
T00845
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tro
Thermomicrobium roseum
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tro03016
]
trd_0093
Enzymes [BR:
tro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
trd_0093
Transfer RNA biogenesis [BR:
tro03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
trd_0093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ACM04884
UniProt:
B9L2B1
LinkDB
All DBs
Position
complement(103477..104052)
Genome browser
AA seq
191 aa
AA seq
DB search
MREEWRLFAAIPVPDDVRQRVAAAIAHLQARGYRAKWVDPEATHLTVKFFGSVATDSLPD
LTRALRKSVTGLARFELQVHGAGAFPHPLRPRVLWLGIDGETAPLAQLVEQVERSAGSFA
EKTDERPFHPHLTLARVRPEDLATLRALPQELERLARLPPLPFTVDRLTLYRSELFRSGP
RYTIIEEFLLR
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaagagtggcggctttttgccgccataccggttccagatgatgtgcgccagcgg
gtcgccgcggctatcgcgcatctgcaagcacgcgggtaccgtgccaagtgggtcgatccg
gaggcaacgcacctcactgtcaagttcttcggatcggtcgcgacggatagcctgccggac
ctcacgcgcgcgctgcgtaaaagcgtgaccggtcttgctcgcttcgagctccaggtgcat
ggtgcgggggcgttcccacacccactgcgcccgcgggtcctctggctcggcatcgatggg
gagacggcgccgctcgctcagctcgtcgagcaggtcgagcgttccgctggttcctttgct
gaaaagaccgacgagcggccattccatccgcatctcacgcttgcccgcgtccggccggag
gacttggcgacgctgcgtgccctgccgcaggaactcgagcgactcgctcgattgccgccg
ctcccgttcaccgtcgaccggctgacgttgtatcggagcgagctcttccgttccgggcct
cgctacaccatcattgaggagttcctgctccgatga
DBGET
integrated database retrieval system
