Thermomicrobium roseum: trd_0623
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Entry
trd_0623 CDS
T00845
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tro
Thermomicrobium roseum
Pathway
tro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
trd_0623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tro03019
]
trd_0623
03016 Transfer RNA biogenesis [BR:
tro03016
]
trd_0623
Enzymes [BR:
tro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
trd_0623
Messenger RNA biogenesis [BR:
tro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
trd_0623
Transfer RNA biogenesis [BR:
tro03016
]
Prokaryotic type
tRNA degradation factors
trd_0623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
CvfB_2nd
KH_KhpA-B
KH_PNO1_2nd
OB_RRP5_4th
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ACM05386
UniProt:
B9KYR9
LinkDB
All DBs
Position
complement(612948..615320)
Genome browser
AA seq
790 aa
AA seq
DB search
MPPIIHERSIEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPL
TVEYEEKMYAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLS
ADQENEPDVLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVV
AGTADAILMVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQEN
VELKQQIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVPNEPLAIGTPQSGLPTA
KEVGDLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQV
LTVCTLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERA
LLAVLPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVT
DQTTGRYTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQARR
GRLFILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTKIS
IEEDGTVFISAANEDAARRAVREIERLTRVPEVGEIFYGRVVTIIPSGAFVEILPGKDGF
LHISEIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKALLEKEAAERAATAQAPA
DGRSHQPRAPQRPSGTAQPERRPGPPTPRRPEQRGPSRPPRPQAQRSTPPPGQYRIGDRL
KELLGEDEPN
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgatcatccatgagcgctccatcgagattgccggtcgtctcctgacgatcgaa
actggccgggtagcggagcaagctgatggtgccgtcctcgtgcgctacggcgaaaccgtc
gtcttgacgacggtggtcggcgcaaaacagccggtcgaaggaatcgacttcttccccttg
acggtcgagtacgaagagaaaatgtacgccgctggcaaaatacccggcggcttcttcaga
cgcgagggtaagccatccgaggccgcgattctcgccgcccggctcaccgaccgcccgatc
cgtcccctgtttcccaaaggctatcggaacgaggtccaagtcatttcgacggttctctct
gccgatcaagagaacgaaccagatgtcctctccatcatcggtgcgtcagctgccctcact
ttgtccgacatcccttggtacgggccagtcggtgccgtccgaatcggcgaactcgatggt
gagttagtgatcaacccaacgagccatcagctcctcgaaagccggatggacatcgttgtc
gctggcacggccgatgccatcctgatggtcgaagggcaggcgaacgagatctcggaagac
cgctttatcgaagctgttgtccgagcgcatcaggagatcaagcggatcgttgctgtgcag
ctcgaactccaggctgtggctggcaaaccgaaacgagaattcgtgccaccgcaagaaaat
gtcgagctcaaacagcagatcgccgactatctcggtgatcggctgcgtgaggctgtcttc
aatccagacaagacactgcgtgtccaggcgaccgctgcactgcgcgaggaagtcatcgct
cacttcgttccgaacgaaccactggccattggcactccccagtctggtctcccgaccgca
aaggaagtgggcgacttgttcgattccctggtcaaggaactggtgcgccgcacgatcctc
gaacagggcgaacgccccgatggtcgcaagccggacgaaatccgcgagatctggatccag
gtcggtctgcttccgcgaccgcatggctctgcactgttcacgcgcggccaaacgcaagtc
ctcacggtctgtacgctgggaaccaaagaagaggaacaattcctcgattccctgggaatc
gaggaaaccaagcgctacatgcaccactacaactttccacccttcagcactggtgaaatc
cggcggctgcgtggtccgagcaggcgagacatcggccacggcgctctggccgagcgcgct
cttctggctgtcctaccgagcgaagacgaatttccttacacgatgcgactcgtctcggaa
gttctcagctccaacggctcgacctcgatggccagcgtctgcggctccagtctcgccttg
atggatgccggtgtccctatccgcaagccggtcgccggcgtcgcgatgggactcgttacc
gatcagacgaccggccgctacaccattctcactgacatccagggaatcgaagatgccctc
ggcgacatggacttcaaggttgcaggcacgcgcgacggaatcaccgccattcaaatggat
atcaaggtgatgggaatcactcccgagatcatgcgcgacgcgctcgagcaagcgcgccgc
ggtcgtctcttcatcctcgacaagatgtccgaggtgatcgacgccccccgtccggagatg
tcgccgtatgcaccacgcatcctgcggatcaagatcaagcccgaacagatcggcgaagtg
atcgggccgggcggacgagtcatccgcgccatccaggagcaaaccggaaccaagatctcg
atcgaagaggatggcactgtcttcatcagtgctgccaacgaggacgctgcgcgacgcgct
gttcgggaaatcgagcggctcacccgggtgccggaggtcggcgaaatcttctacggccgc
gtggtcaccatcatcccctccggcgccttcgtcgagatccttcccggcaaggacggcttc
ctccacatttcagagatcgctcccgagcgggtccgctcagtggaggatgtcctcaaggtc
ggacaagagatcaacgtcatggtcatcggtgtccgcccggacggcaagatcaacctttcc
cgcaaagctctcctggagaaggaagcggcagaacgtgccgccacagcacaagcaccagcc
gatgggcgaagccaccagccgcgagcacctcagcggccgagtggaacggctcagcctgag
cgacgccctggtcctccaacaccccggcgaccggaacagcgtggtccgagccgcccacca
cgaccacaagctcagcgttccaccccaccacctggtcaataccgcatcggagaccgcctc
aaggaacttctgggggaagacgaaccgaattga
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