Thermomicrobium roseum: trd_0700
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Entry
trd_0700 CDS
T00845
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tro
Thermomicrobium roseum
Pathway
tro03030
DNA replication
tro03410
Base excision repair
tro03420
Nucleotide excision repair
tro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
trd_0700
03410 Base excision repair
trd_0700
03420 Nucleotide excision repair
trd_0700
03440 Homologous recombination
trd_0700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tro03032
]
trd_0700
03400 DNA repair and recombination proteins [BR:
tro03400
]
trd_0700
Enzymes [BR:
tro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
trd_0700
DNA replication proteins [BR:
tro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
trd_0700
DNA repair and recombination proteins [BR:
tro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
trd_0700
NER (nucleotide excision repair)
GGR (global genome repair) factors
trd_0700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
DUF8136
HHH_2
HHH_5
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ACM05231
UniProt:
B9KYZ1
LinkDB
All DBs
Position
complement(687543..690296)
Genome browser
AA seq
917 aa
AA seq
DB search
MPERSRRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPDYV
IVCFDTGRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG
TLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPE
RLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEMLDRIDEVEPPRLREALRAAR
ETVLASRRLATIVRDADITLDLEQARFGDFDRERVLQLFRELEFRSLVPRLPQPRQPVRK
TAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDRSYY
VPLGHTTGDTQLDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFDTMI
AAYLLGENAVGLKELAFTKLGWEMEEITELIGRGKKQLTMDRAEIARVTQYACADVEATY
RLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALE
RRIYELAGHPFNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAIL
EYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGLA
VRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATAS
EVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAYFQRFPGVA
RYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGTAADIMKLA
MIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVELSVPLEVDAK
AGPNWADLEPVRVKLSH
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcgctcacgtcgaccacgcctggtactcgttgatggacatgggctcgcctat
cgcgcgtatcacgcgttgcccccgactctcgcgaccagtgccggcgaaccgacacatgtg
gtgttcggattcgccagcatgttattggaagtgctgaacgatttcgaacccgattacgtc
atcgtctgtttcgatacgggacggagctttcgacaacaactctacgaggaatacaaggct
caccgccctgaaacaccggatgacctcaagcaccagctcgagcgaatccgccaactactc
gatgcgttgggaatcccgatcgtcacgcgcgagggctacgaagctgatgacctcatcggg
acactcgctgctcgcgccactgccaacgggctcgaagttctgatcgtcaccggcgatacc
gatttgctccagctcgtcgatgaagatgtccgtgtcatccttcccggtcgccaacgcttc
ggcgattaccgtgtttatgaccgtcaagcagtcatcgagcggtacggctttccacccgaa
cggttgcccgaatacaaggcactggtcggtgatccgtccgacaacattcctggagtcccg
ggaatcggcgagaagacagcgacacgactcatccagcgattctcctccctcgaggagatg
ctcgaccgcatcgacgaagtcgaaccgccgcgactgcgcgaggcgcttcgggcggcccgc
gaaaccgttctcgcaagtcgccgcctcgccaccatcgttcgcgatgcagacatcaccctc
gacctcgaacaggctcgcttcggcgatttcgaccgggaacgggtcctccagctgtttcgc
gaactcgagttccgcagcctggttcctcgacttccgcaaccgcgccagccggtgcggaag
acggcggcaccagcgagtcagcgacgcgccgtcctgaccgatgccgatttgagcgacctt
gtccgggatttggaaacctgtcaggcctttgcgctcgatgtagagacgacagctttgcat
cccatgtacgccgacctcgtgggcatcgcgttggcgacagctcccgaccggagctattac
gtgccgctcggacacacgacgggtgatacccaactcgatatcgaacaggtgttgcaacga
ctggcgcccttcctgcgccatccagagaagcaacgttatgcgcaccacggcaaatacgat
gccctggtcttggaacgtgccggttttccccgaccacacatcgacttcgatacgatgatc
gccgcctacctactgggcgaaaatgctgtcggcctcaaagaattggcattcacgaagctc
gggtgggagatggaggaaatcaccgagctaattggacggggcaagaagcaactcacgatg
gatcgcgccgagatcgcacgggtcacgcaatacgcctgtgccgacgtcgaggcgacatac
cggttagtcgaggtacttcgtccacaactcgaagcccacaatcaactccggctgttcacc
gaaatcgaacttcctctcatcgatgtactgatcgacatggaaaaggcgggaatcgcgatc
gatgtgccgtacctcgaacagctctccatcatgctggacggtcagctgcatgcgctcgag
cgacgcatctacgaactggctgggcatcccttcaacatcaactcgccacaacagttgagc
accctgctcttcgacgaactcggcctgcctcgcggcaaacgaaccaagactgggtattca
gtttctcaagaagtgctcgagaatctccgcgatacccaccccatcgtcgaggcgattttg
gaataccggcaactcctcaaattgaagtcgacgtacgtcgatgccttaccgcggcaagtc
catccccaaaccggacgcgtccacacgattttccatcaaactgtcgcggccaccggccgc
ttgagctcctccgacccgaaccttcagaacattcctgctcgcggcgagctgggactcgcc
gttcgccgcgccttcatcgctgacaatcgcccaggttatcgaatcgccgatgaaccgatc
ctgcttctttcagttgactactcgcagatcgagcttcgcctgatggctcacttcagtcag
gatcccgcactcctgcgtgccttcgctgaaggcaaggacattcacgcggctaccgcgtct
gaagtgttcggggtcccactcgacgcggtcacgccagagatgcgtcgcatcgcgaaagtc
gtcaatttcggcatcatgtatgggatgcaagcgtacggcctcgctcgcgacaccggtatg
agccgtcaagacgcacagcgcttcatcgaagcgtattttcagcgcttccccggcgtcgcc
cgttatctcgaagaaacgagacgccgtgcggccgaactcggttacgtcgaaacgctcttc
ggccggcggcgatacttgcccgaaatcacctcctccaacccggcacgacggcaggcggcc
gaacggatggcggtcaatatgccgctgcaaggcaccgcagccgatattatgaagttggcc
atgatcgctgtccaccgagcgctggccgaacgcggcttgcgcagccgcatgctgctccag
gttcatgacgaactcgtcctggaggtaccggagtcggaacttgcgacgacaacggaactc
gtcacgacacgcatgagtcgcgtcgtcgaactcagcgtgccactcgaagtcgatgccaaa
gcggggcccaattgggctgaccttgagccggttcgagtgaaactctcccactag
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