Thermomicrobium roseum: trd_1194
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Entry
trd_1194 CDS
T00845
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tro
Thermomicrobium roseum
Pathway
tro03410
Base excision repair
tro03430
Mismatch repair
tro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
trd_1194 (recJ)
03430 Mismatch repair
trd_1194 (recJ)
03440 Homologous recombination
trd_1194 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tro03400
]
trd_1194 (recJ)
DNA repair and recombination proteins [BR:
tro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
trd_1194 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
trd_1194 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
trd_1194 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACM05474
UniProt:
B9L1D5
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All DBs
Position
complement(1181856..1183541)
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AA seq
561 aa
AA seq
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MPRYRWREPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDS
GRAVSLVEEVRCRSRPVVVFGDYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDGYGFQ
RHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVLDHHAVHDEAWPDELAFVSV
ARPDAPPVFRTLSAVGVAYQFARLLLGNEAASRWLPLVALGTVADVVPLVGINRTLVALG
LKRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAGRMDDPRLALELLLT
ADAQRAEELARKLNELNALRQRAIERMLAEAEQRIDALGSLPPVLVLADSAWSVGLVGLA
ASKLVSRYARPVVLLARESEVSRGSARSIDGFDIAAALARCRDLLIDHGGHHAAAGLTVE
TERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIALETWEVLAQLEPYGHGNPVP
RFLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWFEGGREIARLARAGRIDIAFTLR
RSDWNGQERVELDVIDIRPTR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgctaccggtggcgggaaccggaacgagttccggaaatggctcgggaactcgcg
gttcatccgctgctggccgctgtcctctaccgtcggggtattcggaaccacgaggaggtg
cggcgcttcctccagccgcacctcagcgacctgcctgatcccgccgccttgcccgacagt
gggagagcggtatccctcgtcgaggaggtacggtgccggtcacgaccagtggtcgtcttc
ggcgactacgatgtggatggtttgaccgcaacgacgctcctcgcgcagctctttggggaa
ttcgggttgacggtcatcccgatggtgccccaccgcctgcgcgatggatatggtttccag
cgtcatcacgtgccaggcgtgctggagcaccggcctgcgctcctcgtgacggtggattgc
ggaaccggtgactgggatgccttgcgcgatgttctccgagctggggttccggtcatcgtt
ctggaccatcacgctgtccatgacgaggcctggccagatgagctggcattcgtctcggtc
gcgcggccggatgctccaccggtcttccgaacactgtcggcagtcggtgtcgcgtaccag
ttcgcacgcctgctgctcgggaacgaagctgcgtcccgttggcttcccttggtcgcgctc
ggtacggttgctgacgtcgttcccttggtcgggatcaaccgaacgctcgtggcgctcggg
ctgaagcgtttttgggagacggcaccgctcggcctgcggacactcgcgcgcctgagtgga
ctcgacagcgcacggggacagcggttgaccagttggcattgcgggtatgtactggggccc
cggctcaatgcagctgggagaatggacgatccgcgcttggcgctcgagctcctgttgacg
gcggacgcacagcgagcggaggaactagcccggaaactcaacgaactcaacgccttgcgg
cagcgtgcgatcgagcggatgttggcggaagccgagcaacggatcgacgcactcgggagc
ttaccgcccgtcctggtgctggctgatagtgcctggagcgttgggttggtcgggctcgcg
gccagcaagctcgtcagtcgctatgcgcgtccggtcgtgctcctcgcccgagagagcgag
gtcagtcgtggttctgcccgcagcatcgatggtttcgatattgcggcagcgctggcgcgc
tgccgtgacctcttgatcgaccatggtggacatcatgcggccgcaggattgacggtggag
acggaacgcatcgcagaactggaagcgcggctgctcgaaatcgccgcggaacaccttggc
caagaggaaccggcgttaccgctcgagttggacgcggaactccacccgtaccagatcgct
ctggagacgtgggaggtgctggcgcagctggaaccctatggtcacggcaacccggtaccg
cgtttcctcgtccgcgatgttcgagctgtcgacatcacgagcacgcagaacgagcggcac
ctgcgcttcaccgtcgtcgcaccggacggcaccgtgcgccaggcggtctggttcgagggg
ggacgagagatcgcccgcttggcccgtgctgggcgcatcgacatcgcgttcacgttgcga
cggagcgattggaacgggcaggaacgagtcgagctggacgtgatcgacattcgtccgacc
cgctga
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