Thermomicrobium roseum: trd_1603
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Entry
trd_1603 CDS
T00845
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tro
Thermomicrobium roseum
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tro03032
]
trd_1603 (topA)
03400 DNA repair and recombination proteins [BR:
tro03400
]
trd_1603 (topA)
Enzymes [BR:
tro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
trd_1603 (topA)
DNA replication proteins [BR:
tro03032
]
Prokaryotic type
DNA Topoisomerases
trd_1603 (topA)
DNA repair and recombination proteins [BR:
tro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
trd_1603 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_recom
DUF7351
Zn_ribbon_GRF
Zn_ribbon_IS1595
Toprim_3
IBR_1
Motif
Other DBs
NCBI-ProteinID:
ACM05956
UniProt:
B9L0B0
LinkDB
All DBs
Position
1595416..1597650
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AA seq
744 aa
AA seq
DB search
MAGKTTKKTTKKTTAATSETTTKKTTRGTSRADGQALVIVESPAKARTIARFLGPGYTVK
ASMGHVRDLPKSKLGVDVAQNFQPTYTVLKEKLPVVKELQESVQRARELILATDPDREGE
AIAWHLIEATRAHDKPVRRIVFHEITEEAIREALAHPRGIDMRLVNAQQARRVLDRLVGY
EISPLLWRKVKSGLSAGRVQSVALRLVVDREREIQAFVPQEYWTIEVDLVPTGNGAQEPV
PFAAALVRVRGEKPDLPNEEAARAVARELEASQYWVVSIKERQKQRRPAPPFITSTLQQE
AGRKLRFPVSLTMQLAQQLYEGVELGPEGSVGLITYMRTDSTQVAASAQQRAREVIAARW
GADFLPERPPVYAKKAKGAQEAHEAIRPTDPARDPESVRPYLTPRQYQLYRLIWERFIAS
QMAPAIYDTVTVEIAAGPTVGADAPYLLRATGSVVRFPGFLVVYREERDEDEVDELDQRP
LPPLATGEVLRLLAVRPEQHFTQPPPRYSEATLVKTLEELGIGRPSTYAPTIETLKQRRY
VVVEDRKLVPTELGMLVTDLLVQHFPDVVDVGFTSRLEEELDEIAAGERDWVPVVREFYE
PFHRQVEEAEQTMERVRLADQPSGEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPLL
EKIGVRCPQCGEGEIVVRRSRKGRTFYGCSRYPDCDFVSWERPTGERCPQCGGVLVVSVR
RGQESVRCSSCSYRPAEEKAPVEA
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggctgggaagacgacgaagaaaacgacgaagaagacaacggcggcaacgagcgagacg
acaacgaagaagacgacgcgcggcaccagtcgtgccgacgggcaggcactggtcatcgtc
gagtcgccggccaaggctcggacgatcgctcgtttcctcgggccagggtataccgtgaag
gcatcgatggggcacgtgcgcgacctgccgaagagcaagctcggggtcgatgtcgcgcag
aacttccagccgacctacacggttctcaaggagaagctgccggtcgtcaaggaactccag
gagagcgtgcaacgggcacgcgagttgatcctggcgactgacccagaccgggagggcgag
gcgatcgcctggcatctgatcgaggcgacgcgggctcacgacaagccggtgcggcgcatc
gttttccacgagatcaccgaggaggcgatccgggaagcgctcgcccacccgcgcggcatc
gacatgcggctggtcaatgcgcagcaggcccggcgcgtgctcgatcgactggtcgggtac
gagatcagcccgctcctctggcgcaaggtcaagagcggtctttccgcagggcgcgtccag
tcggtcgccttgcgcctggtcgtggaccgcgagcgggagattcaggcgttcgtcccccag
gaatactggacgatcgaggtcgatctcgtaccgaccggaaacggtgcgcaggaaccggtc
cccttcgcggcagcactggtccgggtacggggcgagaaaccggaccttccgaacgaggaa
gcggcgcgagcggtcgcccgcgagctcgaggcctcgcagtactgggtggtttcgatcaag
gagcggcagaagcagcgtcgtcccgcaccgcccttcatcaccagcacgctgcagcaggag
gccgggcgcaagttgcgcttcccggtcagtctgaccatgcagttggcccagcaactgtac
gagggagtagaactcgggcccgagggcagtgtcggcctcatcacctacatgcggaccgac
tcgacgcaggtggccgcatcagcccagcaacgggcacgcgaggtgatcgcggcccggtgg
ggagctgacttcttgcccgagcgcccaccggtctatgccaagaaggcgaaaggggcacag
gaggcacacgaagcgattcggccgactgacccggcacgcgatccggagtcggtgcgcccg
tatctcacgccgcgccagtaccagctctaccggctcatttgggaacggttcatcgcgagc
cagatggcaccggccatctacgacacggtgacggtcgagatcgcggccgggccgacggtc
ggggccgatgccccgtatctcctgcgggccacgggatcggtcgtccgcttcccgggtttc
ctcgtcgtctaccgggaggagcgtgacgaggacgaggtcgacgaactggatcagcgaccg
cttccaccgctcgcgactggcgaggtcttgcgcctgctcgccgtccggccggagcagcac
ttcactcagccgccgccccgctacagcgaggcgacactggtcaagacgctggaggagctg
gggatcggtcgaccgagcacctacgcaccgacgatcgagacgctcaagcagcgccgttat
gtcgtcgtcgaggatcgcaagctggtcccgaccgaactcggtatgctggtgaccgatctc
ctcgtccaacacttcccggacgtggtcgatgtcggcttcacctcccgcctggaagaggaa
ctcgacgagatcgccgctggagagcgcgactgggttccggtcgttcgggagttctacgag
ccgttccaccgccaggtggaggaagccgagcagaccatggagcgggtgcggctcgctgac
cagccgagcggcgaggtctgcgagctctgcggccgaccgatggtgatcaaggagagccgg
ttcggccggttcctctcctgctcgggtttcccggagtgcaagaacaagcgcccgctcctg
gagaaaatcggggtgcgttgcccgcaatgcggcgagggcgagatcgtcgtccggcggagc
cggaagggtcgaaccttctatggctgcagccgctatcccgactgcgatttcgtcagctgg
gagcgaccgactggggaacggtgcccgcaatgcgggggagtgctggtggtgagcgtgcgg
cgagggcaggaaagcgtgcgctgctcgtcgtgcagctatcggccagcggaggagaaggcg
ccggtcgaagcctga
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