Thermomicrobium roseum: trd_1613
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Entry
trd_1613 CDS
T00845
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tro
Thermomicrobium roseum
Pathway
tro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
trd_1613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tro03400
]
trd_1613
Enzymes [BR:
tro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
trd_1613
DNA repair and recombination proteins [BR:
tro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
trd_1613
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
PriA_3primeBD
PriA_C
Helicase_C
Zn_ribbon_PriA
AbiEi_4
HTH_20
AAA_16
DZR_2
Trm112p
DUF3107
PIF1
ADDB_N
Motif
Other DBs
NCBI-ProteinID:
ACM05571
UniProt:
B9L0C0
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All DBs
Position
1606901..1609339
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AA seq
812 aa
AA seq
DB search
MTQPRYADIVLELEPGERRPLLTYGVPAELADRIRLYQAVWVPLRDEVRLGVVASLHEEA
PAFAVRPVVGVVEPEFVLTPEQWALAEWLVEETLCTLWEAVALFLPPRLAQRVEVLLRPT
GAVPTGRLSPVQRRLLDLLAQRGPLTLEQAQRALGRSLTTALERAVSTGLIERLPIVRPI
QRVVSEQFLRPRLDSDPPTDAAQGRAYEIIRRWYEEHDGALLPRRFLHRLGLSPATVQML
VQRGLVEVVELPRGGLPTVQGGPDRPLTLTPEQQQAWEAIRSMFDQDPPRPLLLHGVTGS
GKTELYLRAIGECLRRGRQAIVLVPEIALATQVVQRVAARFPGRTVLVHSGLRESERSAV
WEAIHQGQAAVVVGPRSALFVPLRSIGLIVIDEEHEAAYKQQEPPPRYHARAVAQRLAEL
HRAVLLLGSATPDVTTAYAAATSQLAVARLRQRVGPLVVGERGEVARARLQLPRVEVVDM
RLEHQLGHAGLFSRALHEAIAAALQRGQQVLLLINRRGSATLVQCRSCGHVEVCPLCDVP
LVYHADRRQLICHRCDLRRLPSTTCPTCGRPALSYYGAGTQRVEREVQQRFPQARVLRWD
RDVVQRGNDPRSLLQRVLRREVDVIVGTQMVAKGLDFPAVTTVGIVHADTGIYLPDYRAA
ERTFQLLTQVAGRAGRHLPGGLVVIQTYTPEHYAIRAASRQDYDAFYQEELAFRQRHGYP
PFRRLVRLVVRHRDELAGRLASEEMAERLREKARELSARDVEVLGPTPAFVSRIRGLYQW
QLLVRGADGPRVVAAIPVHGGWIVDVDPVSLL
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcagccgcgctacgcggacatcgttctcgagctggagccgggcgagcgacgtcca
ctcctgacgtacggcgtgcccgctgaactcgccgaccggattcgcctctatcaggcggtc
tgggtgccgctgcgcgacgaggttcggttgggggtcgtggccagcctgcacgaggaggca
ccggctttcgcggtgcgccccgtcgtcggcgtggtcgagccggaattcgtgctgactccc
gagcagtgggcactcgccgaatggctcgtcgaggaaacgctctgcacgctctgggaagct
gtcgcactcttcctgccgccgcgactcgcccagcgtgtcgaggtgctgttgcgcccgacc
ggtgcagtaccgaccgggagactctcgcctgtccaacgccgtctcctggaccttctcgca
cagcgcgggccgttaacgctcgagcaggcgcaacgagcgctcggccgctccctgacgacc
gcgttggagcgcgcggttagcaccggactcatcgagcgtctccccatcgtgcgtccgatc
cagcgcgtggtatccgaacagttcttgcgtccgcggttggacagcgatccacccactgat
gcggcgcagggccgtgcctacgagatcatccgccgttggtacgaggagcacgatggcgca
ctgctgccccgtcggttcctccaccggctggggctctccccagcgaccgtgcagatgctc
gtccagcgcgggctggtggaggtcgtcgaactgccgcgtgggggactaccgactgtccag
ggtgggcccgatcgcccgctcacgctcacaccggagcaacaacaggcatgggaagcgatc
cggagcatgttcgaccaagatccgccgcgcccgctcctcctgcacggcgtgacggggagc
ggcaaaaccgaactctatctccgagcgatcggcgagtgcctccggcggggtcggcaggcg
atcgtcctggtcccggagatcgccctggcgacccaagtcgtccagcgtgtcgcggcacgc
tttcccggtcggacggtcctggtccacagcggcttgcgcgagagcgagcggtcggccgtt
tgggaagcgattcaccagggacaggccgccgtggtggtcggcccacgctccgcgctcttc
gtcccgctgcggtcgatcggcttgatcgtcatcgacgaggaacacgaggcagcctataag
caacaggagccgccaccacgctatcacgcgcgggcggtcgcccagcggctcgccgagttg
catcgcgcagtgcttctcctcggaagcgcgacaccggacgtcacgacggcctatgcagcg
gcgacgagtcagctagcggtcgcgcgcctgcggcagcgggtcggaccactggtcgtcggg
gagcggggtgaggtcgcgcgggcgcgtctccagctcccgcgtgtcgaagtcgtggacatg
cgactcgagcaccagctcggccatgccgggctgttcagccgagcactgcacgaggcgatc
gcggcagcgttgcagcggggccagcaggttcttctcctcatcaaccggcgtggctcggcg
accttggtccagtgtcgatcctgcgggcacgtggaagtgtgcccgctctgcgatgtcccg
ctcgtctatcacgccgatcgccgccaactgatctgtcaccgttgcgatcttcgccgcctc
ccgagcacaacgtgcccgacgtgcgggcgccccgcgctgagttattacggagcgggaacg
cagcgagtcgaacgcgaggtgcagcaacgttttccgcaagcgcgcgtgctgcgctgggat
cgggacgtcgtgcagcgcggcaatgacccgcgatcgcttctccaacgtgtcctccgtcgc
gaggtcgacgtcatcgtcggaacgcagatggtcgccaaagggctcgattttcccgctgta
acgacggtcgggatcgtgcatgccgatacgggcatctatctcccggactatcgagcggcc
gagcgcacgttccagttgttgacacaggtcgctgggcgagccggccggcatctcccgggt
gggctcgtcgtcatccagacctacaccccggagcattacgccatccgcgccgcgagccgg
caggactacgacgccttctatcaggaagaactcgcgtttcgccaacggcatggttacccg
ccgtttcggcggctggtccggctcgtggttcgccaccgtgacgagttggccggacgactc
gccagcgaagagatggcggaacgcttgcgggagaaggcgcgagaactcagcgcacgcgac
gtcgaggtgctgggtcccaccccagccttcgtcagccggatccgcggtctgtatcagtgg
caactcctggtccggggtgccgatgggccgcgggtcgtggcggcgataccggtgcacggc
ggctggatcgtggatgtcgatccggtgagcttgctctga
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