Thermomicrobium roseum: trd_1879
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Entry
trd_1879 CDS
T00845
Name
(GenBank) metal-dependent phosphohydrolase, HD region
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tro
Thermomicrobium roseum
Pathway
tro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
trd_1879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tro03019
]
trd_1879
Messenger RNA biogenesis [BR:
tro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
trd_1879
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
DUF3568
IFT46_B_C
YfbR-like
Motif
Other DBs
NCBI-ProteinID:
ACM05090
UniProt:
B9L1X9
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All DBs
Position
1889115..1890644
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AA seq
509 aa
AA seq
DB search
MEIVLVVAAAIVAAIAAAVGTYLYLQRAARSRLRATGDEVRRLLEEAEARQREILLEAKD
AALKLREELEQEYQQRRQQVERLERRLQAKEEQLDRRLENLEKRERKIQAQEKEIEERLQ
DVARLEQERQAELQRVAQLSLEEARQLVIQQAIEEAREILNRQVRELEQQVREEAHQRAR
MILATAIQRIASEYVAEATVTVVPLPSDDMKGRIIGREGRNIRALEQATGVDLIVDDTPE
AVTLSSFDPVRREIARRALLKLIQDGRIHPARIEEVVEKTRQEVEQIIWEEGERAALEAG
VQGLHPDLIRLLGRLRFRTSYGQNVLQHSIEVALIAGALAAELGADVNVAKTAGLLHDIG
KAVDHEVEGPHALIGADIARRLGRSAKIVHAIAAHHGEEEPRTVEAFIVAAADAISGARP
GARREMLEAYIKRLEALESVATSFPGVQKAYAIQAGREVRILVKPDQIDDYGALRLARDV
VKKIQDTLDYPGQIKVTVIRETRAIDYAR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgtattggtggtcgctgcggcgatcgtggcagcgatcgctgcggcagtcgga
acgtatctgtacttgcagcgggcagcgcgctcgcgcctgcgagcgacgggagacgaggtg
cggcgactcctcgaggaggccgaggcacggcagcgcgaaatcctgttggaagccaaggat
gcggccctcaagttgcgggaagagctcgagcaggagtaccagcagcggcgccagcaggtc
gagcgcttggagcggcgactgcaggctaaggaagagcagctcgaccggcgtctggagaat
ctggagaagcgggaacgcaagatccaggctcaggagaaggaaatcgaggagcgcttgcaa
gacgtcgctcggctcgagcaagagcgacaggcggagctgcagcgggtggcgcagctgtcg
ctggaggaagcgcgccaactggtcatccagcaagcgatcgaagaggcgcgcgaaatcctc
aatcgccaggttcgtgaactcgagcagcaggttcgcgaggaggcgcaccagcgtgcccgc
atgattctggcaacggcgattcagcgaatcgcctccgagtatgtcgcggaagcgacggtg
accgttgtcccgttgccgagcgacgacatgaaaggacgcatcatcggccgggaagggcgc
aacatccgcgcattggagcaagcgacgggcgtcgacctcatcgtcgacgatacgccggaa
gcggtgacgctttcgtcgttcgatccggtccgccgggagatcgcccggcgtgcactcctg
aagttgatccaggacggccgaatccacccggcgcggatcgaagaagtcgtcgagaagacg
cgtcaagaagtcgagcagatcatctgggaagagggagagcgggctgcgctggaggcggga
gtccaagggctgcatccggatctcatccgcttgctgggtcggctccgcttccgcacgagt
tatggccagaacgtgctccagcattcgatcgaggtcgcgttgatcgctggagcgttggca
gctgaactcggggccgatgtcaatgtggccaagactgcgggacttctccacgatatcggc
aaggcggtcgatcacgaagtcgagggaccgcacgcgctgatcggtgccgatatcgctcgg
cgtctcggccgctcggccaagatcgtccatgcgatcgcggcgcatcacggtgaagaagag
ccgcggaccgtcgaggcgttcatcgttgccgcggcggatgcaatcagcggggctcggccg
ggggcacggcgcgagatgctcgaagcctacatcaagcggctggaggcgctggagagcgtg
gcgacctccttccctggtgtgcaaaaggcctacgcgatccaggcagggcgcgaggttcgc
attctggtcaagccggaccagatcgatgactatggcgcgttgcggctggcccgcgatgtc
gtcaagaagatccaggacacgctggactatcccggacagatcaaggtcacggtcatccgc
gagacacgcgcgatcgattacgcgcgctag
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