Thermomicrobium roseum: trd_A0041
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Entry
trd_A0041 CDS
T00845
Name
(GenBank) RNA polymerase sigma-D factor (Sigma-28)
KO
K02405
RNA polymerase sigma factor FliA
Organism
tro
Thermomicrobium roseum
Pathway
tro02020
Two-component system
tro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
trd_A0041
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
trd_A0041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tro03021
]
trd_A0041
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
tro02035
]
trd_A0041
Transcription machinery [BR:
tro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
trd_A0041
Bacterial motility proteins [BR:
tro02035
]
Flagellar system
Flagellar assembly proteins
Stator
trd_A0041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_23
MarR_2
UPF0122
HTH_24
HTH_10
GntR
HTH_Tnp_ISL3
HTH_Crp_2
HTH_IclR
HTH_28
HTH_3
Rv2175c_wHTH
HTH_37
HTH_5
Peptidase_S41_N
HTH_Tnp_4
TrmB
HNF-1_N
Sigma70_ECF
KORA
PCI
UPF0175
DUF134
GerE
Motif
Other DBs
NCBI-ProteinID:
ACM06797
UniProt:
B9L5B4
LinkDB
All DBs
Position
unnamed:35746..36534
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AA seq
262 aa
AA seq
DB search
MAIPARQEGRLRQRLRRIEARDDTRAQLVEQYAPLVKYVVDRLRLSLPPSVERDDLIGYG
TIGLLEALDRFDDTRGVKFETYAAMRIRGAILDALRTLDIVPRSARSRARQIEQATREFF
AEYGRMPSENELADHLGMTTTELQQAISDAACLFLPLQASEDPDTLTLEEQLADPNALEP
GEVAAEEDLKQRIAAALATLSERDRLIVSLYYYEDLTMREISQLLGISESRVSQILNRVR
LQLRALLRERGVGLDDLEPGAR
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcccggcacgccaagaaggaaggcttcgccagcggctccgccgcatcgaggcc
cgtgacgacacacgtgcgcaactcgtcgagcagtacgcaccgctcgtcaagtacgtggtc
gaccgcctgcgactctcgctgcccccgagcgtggagcgggacgacctcatcggctacggg
acgatcggtctcctggaggcgctggaccggttcgatgacacgcggggggtgaagttcgag
acctacgcagcgatgcggatccgcggggccatcctcgatgcgctgcgcacgctcgatatc
gtcccgcggagtgcccgcagccgggcacgccagatcgagcaggcgacccgggagttcttc
gccgagtacgggcggatgcctagcgagaacgaactggccgaccatctcggcatgaccacg
accgaactgcagcaggcgatcagtgacgctgcctgccttttcctcccgctgcaagcgagc
gaggatccggacacgctcacgctcgaagagcaactcgctgaccccaatgcgctggagccg
ggcgaggtcgctgccgaagaagatctcaagcagcggatcgctgccgcactggccacgctg
agcgagcgcgatcgcctgatcgtctcgctctactactacgaggacctcaccatgcgggag
atcagccagctgctcggcatttccgaatcacgggtgagccagatcctcaaccgagtgcgg
ttgcagctgcgcgccctgttgcgcgagcgtggcgtcggtctggacgacctggaaccgggg
gcgagatga
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