Triplophysa rosa: 130545108
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Entry
130545108 CDS
T09216
Symbol
pdzrn3a
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tros04121
]
130545108 (pdzrn3a)
Enzymes [BR:
tros01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130545108 (pdzrn3a)
Ubiquitin system [BR:
tros04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130545108 (pdzrn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
zf-C3HC4_2
PDZ_2
Sina_ZnF
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-TRAF
zf-RING_5
Prok-RING_4
zf-rbx1
U-box
zf-RING_6
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
130545108
NCBI-ProteinID:
XP_057175441
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All DBs
Position
LG21:complement(15373043..15404230)
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AA seq
976 aa
AA seq
DB search
MGFDLDRFESTVEPDLICKLCGKVLEEPLTTPCGHVFCAACVLHWLSKVNSCPVQCQKMS
LKELNHVLPLKSLILKLDINCDYRDRGCNRVMKLQHLSEHIENCDFSPVRCRNEGCDAVL
SLKDVASHMREECEHRPVELCADGCGLMLSLKEKSDHRCLEALKTHSGFLQGKVLDLERE
LKRRRLRFSRRERSLLSKLSALHCELHMTEYKGRIDALQNSCIPFNKEEETATLNVTLHR
ASGCLGFNIIGGWSCEGQEGDSSNGIYISKVLENGTAEKSGLHVHDRIIEVNGRNLSQAT
HDQAVEAFQTAKEPIEIRILRRKAQKTLVPVQSVDSSTQTNITFKYLKHIEAMVKLPSPS
LPLGMAVLDTFLIPTDCHMTRHDSPSQPDFFVGTQEAIESRGLEYEIHPDGVTAKNGRIQ
ERDQIIQINGVDIQSHEEAVRPLTEVESKNVTLLAARPQNQGNCLLEDRNHFVDDLRIDM
SKHHRAMEFTARMLKESRHEDDGGTTDTATIQSNLHEKDSGVGRTDDSTRNDESSEQDIL
GDDVTSVXDTLPGNHKKCNYGQDTMESRDIHLSNDSSLSVDNGDSGRFLDSPGMVCKRFR
ELLELKCTPNGSSPCEYVEHDAKLYGERVSLDSEELDVQMLNEELLKIELECLRIIQAHS
LQTGEGEPSSNDSGTKHLTSVEKVHQDGKQADKESSSAYNTGESGWSIPPPDELSPDFQS
VVTKDKGINSPVHGRNSSKPCPKHPLSPIQETSSKSHSPQGNSEVLNGAKTKQNVKKTPG
KCQSLYIPAHAQHYKSYMHLIQQKSAVEYAQSQISLVSLCKNPTPCFSRPKMEWKVKIRS
NGTRYITKRPTRDQLLKERALRIREERCSVTTDDDATSELKLGRYWNKEERKQHVVHAKE
QRQRRELIKQGRIELGGARDDKAAPDIIQLSHKKMTRRRNKRILDNWMTIQELLTHGTRS
TDGTRLYNSFLSVTTV
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgatcttgatcgtttcgagagtaccgtagagccggacctcatctgtaaactg
tgtggcaaagttttggaggagcctctgaccactccgtgtggacatgtgttctgcgctgcc
tgcgtgctccactggctctccaaagtcaacagctgccccgtccagtgtcagaagatgtcc
cttaaagaactgaaccacgtcctgcccctgaagagcctcattctgaaactggatattaac
tgcgactaccgcgaccggggctgtaacagagtgatgaagctccagcatctctcagagcac
attgagaactgtgacttctctccggtgagatgcaggaatgaaggatgcgacgcggtgctc
agtctgaaggacgtcgcgtcacacatgcgggaggaatgcgaacacagaccggtggagctt
tgtgcggatggatgtggactgatgctcagcctcaaagagaagtcggaccaccgctgtctt
gaggcgctgaagacgcacagcgggtttctccagggcaaagtgctggatttggagagagag
ctgaagcgccggcgcttgaggttcagtaggagggagagatcgctcctttccaaactttct
gcgcttcactgcgaacttcacatgaccgagtacaagggcaggattgacgcgctgcaaaac
agttgcatccctttcaataaggaagaagaaacggcgaccctcaatgtgaccctccacaga
gcatcaggatgtctcggatttaatatcattggaggatggtcatgtgagggacaggagggc
gattccagcaatgggatctatatatcaaaggttttggagaatggaacagcagaaaagagt
ggactgcacgttcatgacaggatcattgaggtgaatggaaggaacctttcccaggccaca
cacgatcaagcagtagaggcctttcaaacagccaaagagcccattgagattcggatattg
cgcaggaaagcacaaaagactcttgtgccggtccagagtgtggacagcagtactcaaacc
aacattactttcaaatatctgaaacatatagaggctatggtcaagcttccctctccatca
ttgccattgggtatggctgtgctggacactttccttatacccactgactgtcacatgaca
agacatgattcaccttcccaaccagacttcttcgtcggcacacaggaagccattgaaagt
agaggacttgaatatgagattcatccagatggtgttacagcaaaaaatggcagaatccag
gagagagaccagattatccagatcaatggtgtggacatccagagccatgaggaggcagtg
agacctttaacagaggtggaaagcaaaaatgtgaccctcctagcggctcgacctcaaaat
cagggcaattgcttgctggaggatagaaaccacttcgtagatgacttgcgcattgatatg
tcgaagcatcatcgggccatggagttcactgcaagaatgctgaaggagagcagacatgaa
gatgatggaggtactactgatacggcaactatacagtccaaccttcacgagaaagacagc
ggtgtggggcgcacagatgacagcactcgtaatgatgaaagctccgagcaggacatcttg
ggtgacgacgtgacttctgtttgagacacacttccaggaaaccacaaaaaatgtaactat
ggccaagacactatggaaagtagagacatacatctaagcaatgactcctcgttgtctgtt
gacaatggagacagcggaagattcctggattcgcctggcatggtgtgcaaacgcttccgg
gaactgcttgaactgaaatgcacgccgaatggaagcagtccttgtgaatacgtggagcac
gatgccaagctatacggagaaagagttagtttggacagtgaagaactggatgttcagatg
ctcaatgaggaactgctgaaaattgagctagagtgtctacgcatcatacaggcacatagt
cttcaaaccggagaaggtgaaccatcgagcaatgattctggtacaaagcacttgacaagt
gtggaaaaagtccatcaagacgggaagcaagcggacaaggaaagctctagtgcttacaac
actggagaaagcggttggagtatccctcctcctgatgaactttctcctgactttcaaagt
gtggttaccaaagacaagggaataaattctcctgtgcacggacgcaactcatccaaacca
tgccccaagcatcctctttctccaattcaagaaaccagctccaaaagtcactctcctcaa
gggaattcagaggtcctgaatggggcaaaaacaaagcagaatgttaagaagaccccaggg
aaatgtcaatccctatatatcccagcccacgcccaacattacaaaagctacatgcacctt
atccagcaaaagtcagctgtcgagtacgcccagagtcaaatcagcttagtcagcctttgc
aagaacccaactccctgtttctccaggcccaagatggagtggaaggtaaaaatccgcagc
aacggaacacggtacatcaccaaaagacctacaagggatcagctgctgaaggaacgtgca
ttgcgcattcgtgaagaacgctgcagcgtgacaaccgatgacgatgcgacgagcgaactc
aaactgggtcgatactggaacaaggaggagcgcaagcagcacgtagtacatgcgaaggaa
caacggcaaaggcgggaactgatcaagcagggtcgtattgagctgggtggtgctagggat
gacaaggcggcaccagatattattcagctcagccacaaaaagatgacgaggagaaggaat
aagaggattcttgataactggatgaccattcaggagctgctgacacatggtacgaggtca
acagatgggacaagactatataattcctttctttcggtgactacagtgtaa
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