Triplophysa rosa: 130545770
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Entry
130545770 CDS
T09216
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tros
Triplophysa rosa
Pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130545770 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130545770 (mtrex)
03041 Spliceosome [BR:
tros03041
]
130545770 (mtrex)
03009 Ribosome biogenesis [BR:
tros03009
]
130545770 (mtrex)
03016 Transfer RNA biogenesis [BR:
tros03016
]
130545770 (mtrex)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130545770 (mtrex)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130545770 (mtrex)
Spliceosome [BR:
tros03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130545770 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
130545770 (mtrex)
Ribosome biogenesis [BR:
tros03009
]
Eukaryotic type
Pre-60S particles
Helicases
130545770 (mtrex)
Transfer RNA biogenesis [BR:
tros03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130545770 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
130545770
NCBI-ProteinID:
XP_057176492
LinkDB
All DBs
Position
LG22:complement(6998994..7023652)
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDDLFSVFDEEQSGSGKKVTPKLEIQPGKTPDKGGKKQTDSPAAAVRKRDADIDG
PDEMVLGKKQKLETVSSEEINLAELMPKVKTEQVETVEGCTHEVALPADEEYKQLKPRVG
KASKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDVGETGGNSGAKWDPKGRK
GGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDEEKKLVEEVFN
NAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKM
KKLEEDYNAIQIPNEESVVTYYKIRQQLFKLGKEIEDFIHKPRYCLPFLQPGRLVRVKKN
DLDFGWGLVVNFSKKANVKAAASDSEPLYVLEVLVHCSKDSVKNSATETAKPAAPAEKGE
MQVVPVMLHLITSISSVRLYIPKDLRSYDNRQSMLKSIQEVQKRFPDSVPLLDPIDDMGI
KDPGLKKVIQKVEAFEHRMYTHPLHSDPNLDAVYTLCEKKALIAGDIKAAKRELKKARTV
LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQA
TALLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSAEAKLDVDEDTYLKQFRPH
LMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAM
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggtgatgatttgttcagtgtttttgatgaagaacagtctggctct
ggtaaaaaagtcactccaaagttagaaattcagccagggaaaacacctgataaaggaggt
aaaaaacagacggattcaccagctgcagctgtacgaaaaagagatgctgacattgatggt
ccagatgagatggtgctcgggaaaaagcaaaaactggaaactgtgtcctctgaagagatc
aatttggcagagctcatgcctaaagtaaaaacggagcaggtggagacagtggagggatgc
acacatgaggtggctttacctgccgatgaagaatataaacaactaaagccaagggttgga
aaagcttctaaggagtatccattcgtactggacccgttccagcgtgaggccatactctgt
atcgacaacaaccagtctgtgcttgtgtcagcccacacgtcagcagggaagacagtgtgt
gcagagtatgccatcgctctggcgctcagagaaaaacagcgagtgatctttaccagcccc
attaaggccttgagcaaccagaagtacagagagatgtatgaggagtttcaggacgtgggt
ctgatgaccggtgatgtcacgattaaccccactgcctcttgtctggtcatgactactgag
attttgaggagtatgctctacagaggatcagaggttatgagggaggtggcgtgggtcatc
ttcgatgagatccattacatgagagactccgagcgtggggtggtctgggaggaaaccatc
atcttgctgccggacaacgtgcactacgtctttctgtcggccactattcccaacgctcga
cagtttgcagagtggatctgtcacttacacaaacagccctgtcacgtggtgtacacagac
taccgccccactcccctgcagcactacatctttccagcagggggcgacggactacatctt
gttgtggatgagaacggagacttcagagaagacaacttcaacacagccatgcaggtcctg
agggacgtgggggaaacaggaggcaacagtggggccaaatgggacccgaaaggcagaaag
ggtggaaccaaaggtccatccaacgtctttaagattgtgaagatgatcatggagagaaac
tttcagccggtgatcatcttcagcttcagtaagaaggagtgcgaggcttacgccctacag
gtggccaaactggattttaacacagacgaggagaaaaagctggtggaggaagtgtttaac
aacgccatagactgcctttctgatgaagacaagaagctgccacaggttgagcatgttcta
ccgttgctcaagagggggattggaattcatcatggaggtctgcttcccatcctaaaggag
accattgagattctcttctctgaggggctgctgaaggctttgtttgctacggaaacattt
gccatggggatcaacatgcccgctcgaaccgttctctttaccagtgcacgcaaattcgac
ggcaaagacttccgctggatcacttctggagaatacatccagatgtcaggccgtgctggc
agaagaggaatggacgagaggggaatcgtcatatttatggtggatgagaagatgagcccc
gcggtgggcaaacagttactaaagggttcggctgatcctctaaacagcgcttttcatctc
acctacaacatggtgctgaatctgctgcgtgtggaagagatcaacccagagtacatgctg
gagaaatccttctaccagttccaacattacagagccgtgcctggtgttgtcgagaagatg
aagaagttggaggaggattacaatgccatacaaatccccaatgaagagagcgtggtgacc
tactacaaaatccgccagcagcttttcaaactgggcaaagagattgaggactttattcac
aagcctagatactgtctgccattcctgcagcccggcagactagtcagggtaaaaaaaaat
gatttggattttggttggggactcgtcgtcaatttctccaagaaggcgaatgttaaggct
gccgctagtgattctgagccgttgtatgtgctggaggttctggtccactgcagtaaggac
agcgtgaagaactcggccacagagacggccaaaccagcagccccagcagagaagggcgag
atgcaggttgttccagtaatgctgcatctcatcacctccatcagctccgtccgtctctac
attcccaaagacctgcgatcttatgacaacagacagagcatgctcaaatccatacaggag
gtgcagaaacgtttcccagatagcgttccgctgctggacccaatagacgacatgggcatc
aaggacccaggcctgaagaaagtcatccaaaaggtggaagcattcgaacacagaatgtac
acacaccccctgcacagcgaccccaacctggatgctgtttacaccctgtgtgagaagaaa
gccctgattgcaggcgacatcaaggcggcgaagcgcgagctgaagaaagctcgaaccgtg
ctgcagatggacgagctcaagtgcaggaagcgcgtgctgcggcgcctgggattcgccact
tcctctgatgtcatcgagatgaagggtcgtgtggcgtgtgagatcagcagtgcggatgag
ctgctgctgactgaaatgatatttaacggtctcttcaatgaccttacagcggagcaggcc
accgcgcttctcagctgcttcgtcttccaggaaaacgccaacgagatgcccaaactgacg
gagcagctggcagcacctctgcggcagatgcaggaatgtgccaagcgtatcgctaaagtg
tcggccgaagcaaagctagatgtggatgaggatacttatctaaagcagttccgtccacat
ctaatggatgtggtctatacctgggccaacggctcctccttctcacagatttgcaagatg
acggatgtgtttgaaggtagtattatccgctgtatgcgaaggttggaagagctcttgagg
cagatgtgccaggcagcaaaggccattggaaacacggagctggagaacaaatttgcaatg
ggtataacgaagataaagcgggacattgtttttgcagccagtctctacctgtga
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integrated database retrieval system
