Triplophysa rosa: 130545921
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Entry
130545921 CDS
T09216
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tros03000
]
130545921 (rc3h2)
04121 Ubiquitin system [BR:
tros04121
]
130545921 (rc3h2)
Transcription factors [BR:
tros03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130545921 (rc3h2)
Ubiquitin system [BR:
tros04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130545921 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
Thiopep_pre
zf-C3HC4_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
130545921
NCBI-ProteinID:
XP_057176833
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Position
LG22:complement(5532564..5564674)
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AA seq
1033 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDGSEHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDALPVNCALLQLVGASVPRGETVNVGGAEDTRHYEVCRMCVEELALYLKPISGGKGVVA
ALSQSALSRPMQRKLVTLVNCQLVEEEGRMRAIRACRSLGERTVTELILQHQNPQQLSAN
LWAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSI
GHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQ
WSSLLYGDLMHKSHMQSIIDKLQSPESFAKSVQEITIILQRTGDPANLNSLRAPLELLAA
IDYNPDAAAPSWGELESVLLAVKVIVHGLVEFIQNFSKKSHESSQAQPNSKYKTSMCRDL
RQQGGCPRGASCTFAHTQEELEKYRIRNRKASGAVRPFLPVSTVMPKGGTKGVTPGSEVG
MGELKNYETEATSGESSPTQLIPRGGDNQVETLLNGLPTTSQEKTSIGRGQSSVMAVEDN
CGPHKHRSVLARPHPELYYSQDLRTLYDLPPYHHPPIPPHKSCSTRFPRSNNVPESTLPP
SVGSLYPDQHPSIPPPDRLGHAPIGHSCPYSMSHGHGMYAPVYDSRRGWRPPLYPREGGR
SNSLPQEVFHSSVYQPPIRERYNSLDSPYCSTMDQRAAMHRDSHARVPLGYEELYRHKQE
QWAHHHGNMNRPSQPSPVFTVDFCPENPEGVGAGCMTCKCHGGEESLAHYSPWSCGTISP
FESEPHHLSTHSCSKQPEGESGCKRWLHMLEPYRRLKDEDPIIPFGEGPIISKWGAISRA
SRTGYHTTDPIQATASQGSVGTTSVNFRDYGSHIGHSDLRWGPRGSDSSSHSSFLESEHL
PASGLHVRRNSFSSGSKQASDLLGKDGADSEPDRDIELELSALDMEDIETLDCKPEEALY
TQRCSQKSHLSMGFSTCGSQLPDRMDAHLMKKMAFRKTFSPGGLSMGKIPMCSPRPGDPP
RPSPGPEVLLNGN
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcggcacaatggaccgagtttctatcctgccccatctgctacaatgag
tttgacggcagcgagcacaagcccatcagcctgggctgctcgcacaccgtctgcaagacg
tgcctgcacaaactgcaccgcaaggcctgtccttttgaccagacagccattagcaccgac
atcgatgcgctgccggtcaactgtgccttgctgcagctggtgggggcgtcggttccaagg
ggagagactgtaaatgtgggcggtgctgaagacacaagacattatgaagtgtgcaggatg
tgtgtagaggagctggcactgtatctcaaacccataagcggagggaaaggtgtggttgcg
gcactcagtcagagcgcgctcagtagacccatgcagaggaagctggtgacccttgtgaac
tgtcagctggttgaggaggaggggcgcatgcgggcgattcgggcgtgcagatctctgggt
gagcgcacagtcactgaactgatcctacagcaccagaacccacagcagctctccgccaac
ctgtgggctgctgtgcgggcacgcggctgtcaattcctcggacctgccatgcaggaagac
gctttgaagcttgtgctgctggctctagaggatggctcggctctgtcacggaaggttctg
gttctgttcgtggtgcaaaaactggaagcgcggttccctcaggcctcaaagaccagcatc
ggacatgtagttcagctgctgtaccgcgcctcctgctttaaggtgaccaaacgggatgaa
gactcctccctcatgcagctgaaggaggagtttcgcacttacgaggctcttcgtcgtgaa
cacgatgctcagattgttcacatcgccatggaagcgggactgcgtatctcacccgagcag
tggtcctctctgctgtatggagacctcatgcacaaatcccatatgcagtcaatcatagac
aagctccagtctccagaatcctttgcaaagagcgtgcaggagatcactataatcctgcag
agaacaggagatccagccaacctcaacagcctcagagctcctctggaactgctcgccgcc
atcgattacaaccctgatgcggctgctccgtcctggggagaactggaaagtgtgttattg
gccgtgaaggtgatcgtccacgggctggtggaattcatccaaaacttcagcaaaaagagc
cacgaaagctctcaggctcaaccaaacagcaagtacaagaccagcatgtgcagagactta
cggcagcagggcgggtgtccgagaggagccagttgcactttcgctcacacacaagaggaa
ctggagaagtacagaataagaaataggaaagccagtggggcggtgagaccctttctccca
gtttccacagtaatgcccaaagggggcaccaaaggggtaactccagggtcagaagtgggc
atgggtgagctgaagaactatgagacagaggcgacgtcaggagagtcatctcccactcag
ctcatccctagaggaggagacaaccaagtcgaaacgctcctcaatggactgcctactacc
agccaagaaaaaacgtcaatcggtcgcggacagtcttctgtgatggctgtagaggataac
tgtggtcctcataaacacaggtctgttctcgcgagacctcatcctgagctttactactct
caggacctgagaacactgtatgacctcccaccgtaccaccaccctcccattcctcctcac
aagtcatgtagcacgcgtttccctcgttccaacaatgtacccgagtccacgttaccccct
tcagtgggttccctgtacccggatcagcacccctcaatccctcctccagacagattaggc
cacgcccctattggtcattcctgtccttactctatgtcccacgggcacggcatgtacgcg
cccgtctacgacagcagacgcggttggagaccgccgctgtatcccagggagggaggccgg
agcaactcgctccctcaggaagttttccattcctcggtctaccagccgccaatccgggag
cgctacaactcgctggatagcccctactgcagcacaatggatcagcgggcagcgatgcac
agggattcgcacgcccgtgttcctcttgggtatgaggaactgtatcgccacaaacaggaa
cagtgggcacatcaccacggcaacatgaacagaccttcccaaccgtctcctgttttcact
gtagatttctgcccagagaatcctgagggtgtgggtgctggctgtatgacttgtaagtgt
cacggtggagaagagagtcttgcccactactctccctggtcgtgcggcaccatcagccct
tttgagtcagagccccaccatttgtcaacccactcctgttccaaacagccagaaggggag
agcggatgcaaacgatggcttcacatgttagagccttacaggagactgaaagatgaagat
cccatcattcctttcggagaggggccaatcatttccaaatggggagccatttctcgagcc
tctcgtactggctatcacaccactgacccgatccaagccaccgcctcacagggaagcgtc
ggtacaacatcagtcaatttcagagactacggctctcatatcggtcacagtgacctcaga
tggggcccacgcggatctgattcctccagtcactccagctttctagagagcgaacatctg
cctgcgtcgggtctgcacgtcagacgtaattccttcagcagcgggtcaaagcaagcctca
gatctgctggggaaagatggggcagacagcgagccggacagagacatcgagttagagctg
tctgctctggatatggaggacattgagacactggactgcaaacctgaggaggctctttac
acacaaagatgctcacagaagagtcatctctctatgggcttcagtacttgcggttcccag
ctgcctgacagaatggatgcccaccttatgaagaagatggcattcaggaagaccttctct
cctggaggtcttagtatggggaagataccaatgtgctcacccaggcctggagacccccca
cgacccagtccaggacccgaggttctgcttaacgggaactga
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