Triplophysa rosa: 130546232
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Entry
130546232 CDS
T09216
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
tros
Triplophysa rosa
Pathway
tros04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130546232 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tros04131
]
130546232 (rabgef1)
Membrane trafficking [BR:
tros04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
130546232 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
130546232 (rabgef1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
130546232
NCBI-ProteinID:
XP_057177368
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All DBs
Position
LG22:complement(14793901..14802474)
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AA seq
502 aa
AA seq
DB search
MSQRTERRGIHVDQSELLCKKGCGYYGNAAWQGLCSKCWREEYQKDRQRQIQEDWALAEK
LQREEEAAYVSTHSSSQTQPPHSHSQPSLATFSKFEEKKTNEKTRKVTTVKKFFSPSSRT
APKKESHEGKTPSPSITRQSSIETDRVSRDFVDFLKTLQKQAGREIHKQSRAFIESMGNK
RDLGVEELSECAQDFYQNMSDRLMNHYKGSSEKVDRVMDQVEKYIMTRLYKSVFCPETTD
DEKKDLATQHRIRALHWVTIQMLCVPVDEEIPEVSDSVVKAITDIIEMDSKRVPRDKLAC
ITSCSKHIFNAIRVTKNEPASADDFLPTLIFIVLKANPPRLQSNIQYITRFCIPSRLMTG
EDGYYFTNLCCAVAFIEKLDAQSLNLSPEDFERYMSGLASPRRPDDPAAWPQTGSNINPV
VSQIHQNQSILSNLEKRQQQVIEEANSLQTELAEWQDSVAREVQEILERYPLEIKPRASA
IDAENVENDRLPPPLQPQVFAG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcgcactgaacgacgggggatccatgtggatcaatcagaattgctgtgcaag
aagggctgtggttactatggaaatgctgcgtggcagggtctgtgctccaagtgctggaga
gaggagtaccagaaagatcggcagaggcagatccaggaggactgggccctggctgaaaag
ctccagagggaagaggaggcagcgtatgtcagcactcacagttcctctcaaacccagcct
ccgcattctcactcccagccctctctcgccaccttttccaagttcgaggagaagaaaacc
aacgagaaaactcgcaaggtcaccactgtgaagaagttcttcagtccctcttcccgcaca
gcacctaaaaaagagagccatgaggggaagactccgagcccctccatcacacgtcagtcc
agcatcgagaccgatcgcgtgtcacgagactttgtggacttcctgaagacattacagaag
caggccggcagagaaatccacaagcagagccgtgcttttatagagagcatgggaaataaa
agggatctcggcgtagaggagctatcagagtgtgctcaggacttctaccaaaacatgtcg
gaccgtctcatgaatcattataaaggttcctctgaaaaggtggacagggtgatggaccag
gtggaaaaatacatcatgactcgactgtataaaagcgtcttctgtccagagactactgat
gatgagaaaaaagacctggccacccagcacaggattcgggccttgcactgggtaaccatt
cagatgctgtgtgttcctgtggatgaagagatcccagaggtgtctgatagtgtagtcaaa
gctatcacagatatcattgagatggactccaaacgtgtgccgagggataagctggcctgc
attacaagttgcagtaagcatatcttcaacgccatcagggttactaagaatgaaccagcc
tctgccgatgacttcctgcctaccctcatctttatcgtgttgaaggccaatccaccccgg
ctgcagtcaaacatccagtacatcacacgcttctgcatcccctcgagacttatgacggga
gaggatggatactactttaccaacttgtgctgtgctgtagccttcatagagaaactggac
gcccagtcattgaatcttagccctgaggactttgagcgctacatgtccggtctggcttcc
cctcgaaggccagatgatccagcagcctggccccagaccggctccaatattaaccctgtg
gttagccagatccatcaaaatcaaagcatcctatccaacctagaaaaaagacagcagcag
gtcatagaggaggcaaacagcctccagacagaactggcagaatggcaggacagcgtggcc
cgtgaggtccaggagatcttggagagatacccactggagatcaagcctcgggcatctgcg
atcgatgcagaaaatgtggaaaacgacaggttaccacctcctctgcagccccaagtgttt
gctggttag
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