Triplophysa rosa: 130546536
Help
Entry
130546536 CDS
T09216
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
tros
Triplophysa rosa
Pathway
tros04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130546536 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tros04990
]
130546536 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
tros04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
130546536 (pdlim5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
LIM_FHL2-3_N
Zn_ribbon_DUF2089
Motif
Other DBs
NCBI-GeneID:
130546536
NCBI-ProteinID:
XP_057177828
LinkDB
All DBs
Position
LG22:19044108..19092261
Genome browser
AA seq
638 aa
AA seq
DB search
MSNSYSVTLIGPSPWGFRLQGGKDFSMPLTISKLTDGGKAAKAKISVGDIVLSIDGIATD
SMTHLEAQNKIKACVGNLSLSLLRSSGVTKNEKEAQEIVKPVPISQPPASTTSTSTANLT
PGTNPYNKTARPFGGGFSTVRSVSPSLSPTPSAAPKASIPSASSAFTPAAPSQQPPQPPF
PLGGGTSRTLSSPSSAPKPASGRSPFANSSSASSSGSSSPARVTGPSSAPTAPQPSVYNT
PINLYSNENACEVAIGQRRGLLESKGEQLNGNRDSSDQATFFQSSTVQFWTARKPVIEME
VNHVSPLSDASKKRLIEDTEDWHPRTGTSQSRSFRILAQITGTENDQAQENRPGKKEEAA
DVQPSAHVTSSVKTMSKTPAGAPRRGNGVPPPTTKSWQSANTAGFPKAGAPAPQTGPSYG
RVGNSLPKGPNPPAPQAQPKDQENSLVQRAEHMPPDTRTPMCGHCNTIIRGPFLVALGKS
WHKDEFTCTHCHCSLADVGFVEERGSVCCEHCYADLFAPTCCRCHQKVLGEVINALKQTW
HVYCFLCTTCQQPIRNDTFHLEDGQPYCERDFYTLFGTSCHGCDFPIEAGDKFLEALGYT
WHDTCFVCSVCTTSLEGQAFFSKKDKPLCKKHAHTVQF
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacagctacagcgtgaccctgatcggaccttcaccctggggctttagacttcag
ggtgggaaagacttcagcatgcccctcaccatctccaagctgacggatggagggaaagcg
gctaaagctaagatcagcgtgggagacatcgtgctctccatcgacggaattgccacagac
tccatgacgcacctggaggcacaaaacaaaattaaagcctgcgtgggaaatctcagtctg
tcgctgctgagatcttccggtgttactaaaaacgagaaggaagcccaggagattgtaaag
cctgtgcccatcagccaaccgccggccagcacaacctccaccagcactgccaacctcacc
cctggcaccaacccctacaacaagacggcacgtcccttcggaggcggctttagcaccgtg
agatcagtcagtccgtccctgagccccacaccgtccgcggcacccaaagcctccatcccc
tcggcctcatccgctttcacaccagcagctccatcccagcagccccctcagcctcccttc
ccactgggcggtggcaccagccgcaccctgtcctcgcctagctccgcccctaagcccgcc
tccggacgctcccctttcgccaactcctcctctgcttcctcctctggctcctcctcccca
gcgagagtgaccggtccctcctctgcgcccaccgcccctcagccctccgtctataacacg
cccatcaacctctactccaatgagaatgcctgtgaggtggccatcggtcaaaggcggggt
cttctggagagcaaaggggaacagcttaacggaaatcgagactcatcagaccaggcaaca
tttttccagtcttcaactgtccaattttggaccgcacggaaacccgtcatagagatggag
gtgaaccacgtgtctccgctcagcgatgccagtaagaagcgtctgatcgaggacacggag
gattggcacccgcgcacggggacgtcacagtctcggtccttccgcatcctggcacagatc
acaggcacagagaacgatcaagcccaggagaaccggcccggaaagaaggaggaagccgca
gacgttcagcccagcgctcatgtgacatcttcagtgaaaaccatgagcaaaacacccgct
ggagcgcctcgacggggcaacggggtcccaccacctacgaccaaaagctggcagtctgca
aacactgcaggatttcccaaagcaggtgcacctgcgccgcagacaggcccctcgtacgga
cgggtgggcaacagccttccaaagggtccgaacccacctgcgcctcaagctcagcccaaa
gaccaagagaattcgctggttcaaagagccgaacacatgccgccggacacacgcacgccc
atgtgtggccactgcaacaccatcatcaggggtccgttcctggtagccctgggcaaatca
tggcacaaggatgagttcacctgcacccactgtcactgctcgctggcagatgtgggcttc
gtggaggaacgggggtccgtctgctgcgagcactgttacgcagatttgtttgcccccaca
tgctgtcgctgtcatcagaaagttctaggggaagttatcaacgccctgaagcaaacctgg
cacgtttactgcttcctgtgtaccacctgccagcagccaatccgcaacgacaccttccac
ctggaggatggacagccgtactgtgagagagatttctacaccctctttggtaccagctgt
cacggctgcgattttccgatcgaggccggtgataagttcttggaggctttgggctatacc
tggcacgacacctgttttgtgtgttcggtctgcaccacgagtctagagggtcaagccttc
ttctcaaagaaagacaagcctttatgcaagaagcacgctcacaccgtccaattctga
DBGET
integrated database retrieval system
