Triplophysa rosa: 130547125
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Entry
130547125 CDS
T09216
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130547125 (zc3h12b)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
130547125 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
UBA_N4BP1_C
zf-CCCH_4
TNFR_ELAPOR1_6th
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
130547125
NCBI-ProteinID:
XP_057178804
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All DBs
Position
LG2:complement(28139559..28161214)
Genome browser
AA seq
1018 aa
AA seq
DB search
MVLELAAPAGAGPALQRCIPHIQRVFRVRVTCSTAESSCDSPEAGSGIIVNIEDGKEEDC
TKAKEYIVSLISPVHKHRERLTLWLQRRLHALRAAIEYESCAVVQVRDHALELQGGHAQV
TAACAMLQRLKMEHHGCRDPQPSPATAGHDTPEEEEEEAGEQGSSSESEGEARLQSGGSG
GVSTALPGDGATGRRREPLIATKPHRQLCRSPCLDRPSFSQSSTLQELRVDDTRSEPSQR
APSLAPPTTGAQPSLRQTSDRDYQTKMDFALKLGYSGEQVESVLSKLGPSALINDVLAEL
VRLGNKGEPESQGGVATASLAPRATGAKEAVSPEASLEEDTPDTYDNLRPIVIDGSNVAM
SHGNKEVFSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPIKDQEILRRLEKEKI
LVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLLMY
SFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYNKSKKCTYGHKCKYYH
PERANQPQRSVADELRAFAKLSAVKTMSEGALAKCGTSGASSKGDSSEAKRVAPKRQSDP
SIRSVACEQEERLCPARKAEASSVPSLVSALSVPTMPLTKSHAAGALNTRSASSPVPGSM
HFTHSSLEHAGSVQYPPILVTNSHGTSMAYGEPFPKYDSVVSDHGYYSMVSDFSTISLQD
SFCSLEQPEPVGVGGGGGYPGRAPSMCPEPGRSHSSDSFSSYSGEMYLSSMEGSLDDSLK
GPPAQTLPSAQTRLQAFAHGFHHESLTRVQSYSTDEPKPGPRKQTSAHLVPHSQHPVVGA
RSSCPGDYPLLSHNMLPSTSPAQQGRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQHA
SWDPLPCGNEPYGYGGYGLTGGLMPCCERVMVRSMPEKMEQIWRSPWDSLPLSMPATRGP
VGEPQERHPIPEHQYQTYRNLCNIFPAYVVHSVMEKNPHMTDPQQLAAVIVTKLRSCH
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctcgccgcgcccgccggtgcaggccctgcgctccagcgctgcatcccg
cacatccagcgggttttccgagtcagagtgacctgcagcacagccgagtccagctgcgac
agccccgaagccggctccggtatcatcgtaaacatcgaggacggcaaagaagaagattgc
actaaagctaaagagtacattgtgtccctaatcagtcctgtacacaagcacagagagcga
ctgacactgtggcttcagcgacgtctacatgccctgcgtgcagctattgagtatgagagt
tgcgccgtggtgcaggtgagggaccatgcgctggagcttcagggaggtcatgcgcaggta
acagctgcatgcgctatgctgcagcgcctcaagatggagcatcacggctgccgtgacccc
cagccctcgcctgccactgccggccatgacactccagaagaggaggaagaagaagctgga
gaacagggaagcagttcggagagcgaaggagaagcacgactgcagagtgggggttcagga
ggtgtcagcacagcattgccaggagatggggcaacaggaaggagacgagagccactcata
gcaaccaaacctcaccggcagctatgtcgatcaccttgtttggatcggcccagcttcagc
caaagcagcaccttgcaggagttacgtgtggacgacacacgcagcgaaccctcgcagaga
gcgccgtcgctcgcaccccccacaactggagcccagccgtccttacgacaaaccagcgat
cgagactaccaaaccaaaatggactttgctttaaaactgggttactctggagagcaggta
gaatctgtgttgagtaaactgggacccagtgcgttaatcaatgatgtgttagctgagctg
gtgcggctggggaataaaggagaaccggagagccagggaggagtggccactgccagttta
gcaccgcgggcaacgggagccaaagaagccgtaagtcctgaggcatctctggaggaggac
acaccagacacgtatgacaacctccgaccaatcgtgattgatggatccaatgttgccatg
agccatggaaacaaagaggtgttctcatgcctgggcatccaactggctgttgattggttc
ctggagaagggccacaaagacatcacagtcttcgtcccagcatggcggaaagaacagtca
agacctgacgcaccaattaaagatcaggagatcctacggaggctggagaaggaaaagatc
ctcgtattcactccgtctcgcagagtccagggccgaagagtggtttgctatgatgaccgc
ttcatcgttaagctagcctgcgattcagatggaatcattgtgtccaatgataactacaga
gacctgcagaatgaaaaaccggagtggaagaaatttatagaggaacgactcctcatgtac
agcttcgtcaacgacaagtttatgcctcctgatgatcctctaggcagacacggtcccagt
ctggagaattttctccgtaagagaccagtcgttccagaacacaagaaacagccgtgtcct
tatggtcagtacaacaaaagtaaaaagtgcacatacggtcataagtgcaagtactaccac
ccagagagagccaatcaaccacaacggtccgtcgcagacgagcttcgagcctttgccaaa
ctctctgctgtaaagacaatgagcgagggggcacttgcaaaatgtggcacctcgggtgct
tcgtccaagggggacagttcggaagcaaagcgagtggcgcccaagcgccagtctgacccc
agcatccggtcagtagcatgcgaacaggaggagagactctgccctgcgcggaaggccgag
gcaagttctgtaccatctctggtctcagcgcttagcgttccaaccatgcccttaacgaaa
agtcatgcggccggagctctgaacacgcgctcggccagcagccccgttccagggtccatg
cactttacccacagctcacttgaacatgcgggcagtgtgcagtatcctcccatcctggtc
accaacagccatggcacctccatggcatacggcgagccgttccccaagtatgactctgtg
gtaagtgaccacggctactattccatggtcagtgacttttctaccatcagcctccaagac
agtttctgcagcctagagcagccagaacctgtaggggtgggcggaggaggaggttatcct
ggcagagcgcccagcatgtgccctgagcctggccgaagccattcgtcagattccttctcg
tcttacagtggagagatgtacctcagctcaatggagggaagcctggatgacagcctgaaa
gggccacctgcgcagacgctaccttcggcgcaaacacgccttcaagccttcgctcacggt
ttccaccatgagtccttgacacgtgtgcagagctacagtacagatgaacccaaaccagga
cctcgcaaacagacttcagctcacttggtaccccactcccagcatccagttgtcggagcc
cgatccagctgcccgggcgactaccctcttctgtctcataacatgttgccttccaccagc
cctgcacaacagggacgctctctaggcatgactcgtatggacagcatctccgattcgcga
ctctacgagagcaaccctctgcggcaacgcagaccaccgctttgcagggagcagcatgct
agctgggaccctctgccatgcggaaacgaaccctatggttacggaggctatgggttaaca
ggaggccttatgccttgctgcgagagggtgatggtccgcagcatgccagagaagatggaa
cagatatggaggtccccatgggatagcttgccactttcaatgcccgccactcgtgggccg
gtgggggagccccaagagcggcaccctattccagaacaccagtatcaaacgtaccgaaat
ctctgtaacatcttccctgcatatgtggtccattcagtcatggagaagaaccctcacatg
accgatccccagcagctggctgccgtcatagtcacaaaattacgttcttgccactaa
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