Triplophysa rosa: 130547833
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Entry
130547833 CDS
T09216
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tros03016
]
130547833 (rtcb)
Enzymes [BR:
tros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
130547833 (rtcb)
Transfer RNA biogenesis [BR:
tros03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130547833 (rtcb)
Prokaryotic type
tRNA splicing ligases
130547833 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
130547833
NCBI-ProteinID:
XP_057180134
LinkDB
All DBs
Position
LG24:4162784..4167156
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGIFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDSVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPAKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARAMS
TEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMMDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAVKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttacaacgatgagctgcagtatctggataaaattgataagaactgctgg
aggattaagaaaggtttcgtgccgaatatgcaggttgagggaattttctatgtaaatgat
cctctggagaaactgatgtttgaagagctgagaaacgcgtgtcgtggtggaggatttggt
ggatttctgcctgctatgaaacaaataggaaacgttgctgccctgccaggaattgtacat
aggtctattggattacctgacgttcactctggatacgggtttgccattggaaacatggct
gcgtttgacatggacaatcctgactctgtcgtctctcctggtggtgtcgggtttgatatc
aactgtggtgtgcgtctgctgcggacaaacctggacgagggtgatgtacagccggtgaaa
gagcagctggcacagtccatgtttgaccacattcccgtcggggtcggatccaagggcgtc
attcccatgagtgcaaaagacctggaggaggctctggagatgggtgtggactggtctctg
agggagggatacgcctgggccgaggacaaagaacactgtgaggaatacggcagaatgctg
caggccgatccagccaaagtctcatccaaagccaagaagagaggactgccacagttggga
actctgggtgcaggaaatcactacgctgagattcaggtggtagatgagatctataatgac
tatgcagccaagaagatgggcatcgatcacaagggacaggtgtgtgtgatgatccacagt
ggcagtcgaggtctcggccaccaggtggcgacagatgctctggttgccatggagaaggcc
atgaagcgagataagatcacagtaaatgaccgtcagctggcctgcgctcgcgcaatgtct
actgaaggtcaggactatctgaaggggatggccgcagcgggaaactacgcctgggtcaac
cgttcatccatgaccttcctcactcgacaggccttctccaaagtgttcaacaccacgcca
gatgatctggacatgcacgtcatctacgacgtctcgcacaacatcgccaaggttgaggag
cacatgatggacggcaaacagaagactcttctggtgcacaggaagggctcgacacgagcg
tttcctcctcatcacccactcatacctgtcgactatcagctcaccggtcagccagtgttg
attggaggaacgatgggtacatgtagttatgtgttgacaggaacagaacagggcatgacc
gagaccttcggcaccacgtgtcatggagcaggtcgagcgctgtccagagccaaatccaga
agaaacctggactttcaggatgttctcgataaactggcagacaagggaatcgccatcaga
gtggcgtcacccaaactggtgatggaggaggcaccagagtcctacaagaacgtcacagac
gtggtcaacacgtgccatgacgcaggtatcagtaagaaggccgtcaagctccgccccatc
gctgtgattaaaggttaa
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