Triplophysa rosa: 130548386
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Entry
130548386 CDS
T09216
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
tros
Triplophysa rosa
Pathway
tros03015
mRNA surveillance pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130548386
09123 Folding, sorting and degradation
03018 RNA degradation
130548386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130548386
03041 Spliceosome [BR:
tros03041
]
130548386
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130548386
mRNA cycle factors
Stress granule specific factors
130548386
Spliceosome [BR:
tros03041
]
Complex C
Other components
Complex C specific factors
130548386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_Nup35
RRM_7
RRM_RdRP1_2
RRM_10
RNA_bind
Motif
Other DBs
NCBI-GeneID:
130548386
NCBI-ProteinID:
XP_057181102
LinkDB
All DBs
Position
LG25:3612796..3616336
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AA seq
450 aa
AA seq
DB search
MFDLLMGRPMRIMWADRNPALRITGVGNIFIQGLAKNITSLTLHDTFSRFGTILSCKVVA
DENGSKGFGFVHYVTYEASERAIQTLNGMMLNDQLVSISHFRSFQERQSNPERAMKNYKS
LFPGVHLYVNNLPYSWTDHQLHRAFSPFGTVTNAKVVRNGGRSKGFGFVCFASREAAAQA
ITAMNGRVIANRWLNVAFSRVKDQDTSVSDCESPSVVTQTLLPSGRFGSVVPQAKTGHQR
TRHLQLESCCRRDAACLLSKCESLVSLVSPLLLDTLVSHTPVDALQRVNQELSELKSDPV
IDAPGTSDTFSAVTSLLSGDFAVVPKTHSNAAQQFSSCLVFSRRWFADVALPQCESLVLL
VSPLLSDTFDSETPHMLTVNQDQSEMTPDRATDAPGPSDGCSDVAVVHDRFGNGSGELRH
MSSLKVGEISWFYKDLHSALFFTFKVIFHK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacctcctcatgggtcggccgatgcgcatcatgtgggccgaccgaaacccagcg
ttgaggatcacaggtgttggcaacatcttcattcagggtctggccaagaacatcaccagc
ctgactctacacgacaccttctctcgtttcggcaccatcttatcttgcaaggtggttgct
gatgagaatggctctaagggatttggtttcgtccattatgtgacgtacgaagcctctgaa
cgagccattcagacgctcaacgggatgatgctgaacgatcagctggtgtctattagtcac
ttcagatcgtttcaggagcgtcagtcaaaccctgagcgcgccatgaagaactacaagagt
ctcttcccgggggtgcatctctatgttaataatctgccctacagctggacggaccaccag
ctgcatagagcgttctccccgtttgggaccgtcaccaatgcaaaggtggtgaggaacggt
ggccgcagcaaagggttcggctttgtgtgttttgcaagccgtgaagctgcagctcaagcc
attacagcaatgaacggacgggtcattgccaacagatggctgaatgttgccttctcgcgg
gtcaaggaccaggatacgtctgtgtcggactgtgaatcgccctccgtggtcactcagacg
ctgcttccttctggacgctttggttccgttgttccacaggcgaaaactggtcatcagcgc
accagacaccttcagcttgagtcctgctgtcgccgggatgcagcgtgtctcctgtctaag
tgtgagagtcttgtctcgctggtctctccactgctgttagacacgctggtgtcccacacg
ccagtagatgcactgcagcgtgtgaaccaggagctgtcagagctgaagtctgatccggtc
attgatgctcctggaacatcagacaccttcagcgctgtaacctctttgctgtctggagac
tttgctgtcgttccaaagactcatagcaatgccgctcaacagttctccagctgtcttgtg
ttcagtcgtcgctggtttgcagatgttgctctgcctcagtgtgagagtctcgtcctcctg
gtctctccactgctgtcagacacttttgactctgagacgccccacatgctgaccgttaac
caggatcagtcagagatgacgcccgaccgagccaccgacgctcctggaccatcagacggc
tgcagtgatgttgctgtggttcacgacaggtttggcaacggttcgggtgagcttagacat
atgagcagcctcaaggtaggagaaatctcttggttttataaggatttgcactcggcactg
ttcttcacatttaaggtaatctttcacaaataa
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