Triplophysa rosa: 130548730
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Entry
130548730 CDS
T09216
Symbol
si:ch211-79m20.1
Name
(RefSeq) LIM domain-containing protein A
KO
K17386
platelet-derived growth factor subunit B
Organism
tros
Triplophysa rosa
Pathway
tros04010
MAPK signaling pathway
tros04020
Calcium signaling pathway
tros04510
Focal adhesion
tros04540
Gap junction
tros04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
tros04052
]
130548730 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130548730 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
tros04052
]
Cytokines
Growth factors (RTK binding)
130548730 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Growth factors/receptors
130548730 (si:ch211-79m20.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
130548730
NCBI-ProteinID:
XP_057181673
LinkDB
All DBs
Position
LG25:complement(6180189..6193924)
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AA seq
500 aa
AA seq
DB search
MMSSRLLLLVLAALAACQCSGRSQGDPIPSSLVDLVLNTPISSMDDLKRLLDVESVEEDD
EKPENEIHANQTHRRFSRSLSVQVAHQAMCKVRTEVMEVTRAMLDKRNTDFLLWPPCVEV
QRCSGCCNTRVLQCVPVSIDTRHLQMTKIKFINRQPVYEKVIIPVEDHVTCSCQPHLSPN
APRLQTTPLPPPRPHPKVTAPKRQSKEELHRHDELKNNQRLHLEDKETHELQWQSKYTLS
HTQGYRQSLSQHALTHTPAGTVNVYKGVVPTRQTTLGAPHMMSDETQTEEVEEHRRKPEH
HTHVGSGDGTTVKTPTVGQHYTQHHHDEQQSKPQQPHHQTTPQQQKHNPTHDSIQSEHSV
PNSGQLDPISRTYSHVEVIGQSSGLSEVLSDHQSEVRKHHHHHQSETSNDQNVPQEQEME
KHQEETQHHLRHQHHHHQHHHTTQGFSHQQITQQTVTKAPRTTPSAPQTPPPLQPLRKRR
RKHRRRMSKASMRAMIMVMS
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctcgcggcttctgctgctggtgctcgcggcgctcgcggcgtgccagtgctcc
ggtcgctcgcagggagaccctattccttcatctctggtggatttagtgttgaacaccccg
atctcatctatggatgacctgaagagacttctggacgtagaatccgtagaggaagatgac
gagaagcccgagaacgagatccacgccaaccaaacacaccgacgtttctccagaagcctt
agcgttcaggtggcccatcaggcgatgtgtaaagttaggacagaagttatggaagtgacc
cgtgcgatgttggacaaacggaatactgacttcttgttatggcctccgtgtgtggaagtg
caacgctgctctggctgttgcaacacacgtgtgctacaatgcgtgccagtttccatagac
acacggcatttacagatgacaaaaattaagtttatcaaccgacaaccggtctatgaaaaa
gttatcatacccgtagaggaccacgtgacttgtagctgtcaaccgcacctttctccaaat
gccccacgcctccagaccacaccccttcctccgccccggccccaccctaaagtaacggca
ccaaagaggcaatcaaaagaggagctccatcggcatgatgaactcaaaaataatcaaaga
ctgcacttagaagacaaagaaacacatgaactgcagtggcagtccaaatacacactttcg
cacacacagggttaccgacaaagcctgtctcaacacgcactcacgcacacaccggcggga
acggttaatgtatataaaggagtagttcccactcgtcaaaccacattaggagctccacac
atgatgagcgatgaaacgcagacagaggaagtcgaggaacatcgcagaaaacctgaacac
cacacgcatgtgggcagtggagacggcacaacagtaaagacgcctactgtgggacagcat
tacacccaacatcaccatgacgaacagcagtcgaaaccacagcaaccacatcatcaaact
acaccacagcaacaaaaacacaatcctacccatgattccattcaatcagagcacagtgtg
ccaaacagcggccaattagatccaattagtcgcacttacagccatgttgaggtgatcggc
caatctagtggcttatctgaagtgctaagtgatcaccaatcagaagttagaaaacaccac
caccaccaccaatcagaaacgagtaatgatcagaatgtgccgcaagagcaggaaatggaa
aagcaccaagaagaaacgcagcatcatcttcgtcatcaacaccaccatcatcaacatcac
catacaacacaagggttcagccatcaacagatcacacaacaaacagtgacgaaagcccca
aggaccacaccctcagccccccagactccacctcctcttcagcccctgcggaagcgtcga
cggaaacatcggaggaggatgagcaaggcctccatgagagctatgataatggtaatgtcc
tga
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