Triplophysa rosa: 130548926
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Entry
130548926 CDS
T09216
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
tros
Triplophysa rosa
Pathway
tros04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130548926 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
tros04091
]
130548926 (frem1b)
Lectins [BR:
tros04091
]
C-Type lectins
Lecticans
130548926 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
Lectin_C
Motif
Other DBs
NCBI-GeneID:
130548926
NCBI-ProteinID:
XP_057181980
LinkDB
All DBs
Position
LG25:11077970..11102763
Genome browser
AA seq
2142 aa
AA seq
DB search
MAVTFFIFTVTLSSLWTHAQGSSLVQVNTGLQVTRGRSVFVTAGVLKFRSMGATEACKVE
VVVTEPVTQRVGKLTPQVFDCQFLQDEVKYVHNGSPLLEEDTVMLRVYRFTDTVTFVETV
LLRVKVVEPQRSLIEFGSVPLVVPEFYGLSNTINSTVLTFKTQAGVVCTVRLLSSEINIS
MLGQLVVEDHTTVQASEAGPRIGRHTGTPCPGNKACDHNTSEVEFLKTDCAAFLTSGLKY
QHLSPPSPEIDYVPIRVEFRDQSSRALLETENIWLPVLIQGAMQNQPPHAAFMSMFILEV
DQFILTPMTTAALDAKDDETPQAQLIFNVTKPPAEGYITHLDDHTKVASSFSWQDLNEMK
IAYQPPNSSYTARRNYEVEFEAIDGSFAASSPILMHISIRTAETNSPRVSWNMGLDLLEG
QSRPITWENLQIVDNDNIDAVTLIAMDGPLNGHLSVRGGKGFMFKVKDLREGVVVYHHSD
SDTTRDYIVFRITDGRHSIRHKFPIYVLPKDDTPPFLINNVAFEVQEGGSVRVEEYMLMA
SDLDSSDDYIQYQLITLPRAGQLVKKTSRHEPGVPVKSFLQRDLFQGLIYYRHLGEEVFE
DSFDFILSDARMPPNLSDRHTVVIHVFPVKDQLPVEVSGTVRSITVKETEVVYITQSQLH
FRDTENPDTDLMYVITRPCFSPGNTRLSDAGRLFYTDSTNAMKKDAMVPVLKSFTQHAVN
HHKVGYMPPIEDIGPDPLFVQFAFSVSDQQGGALTGLTFNITVTPVDNQAPQMFTNLLRV
EEGGGSFLMGEHLLVQDVDSSEDQLRVHVKTQPQHGRLELQGTTLMEGDGFSLQDLKALR
VRYIHDDSETLKDSIGLTITDGINSANGELLVQILPVNDEPPKLGSDLRAELSCKEGGRV
QITVEYISATDEDSEDTRLTYMLARTPAHGVLQRNGVTVDKFSQLDVLNGLIFYLHTGGE
IGPDPVSDTVTLIVSDGEAGIMDGCCPEDALPPPVPLHGTLPVYDLNITVVPVNNQIPAI
TLGGMFLVDEGSSACLCGGVLEATDPDSHPDQLIFHLVTPPQYGFLENVLPSPGFEKSNA
GLRVVSFSQLHLSSGFINYVQSLNHGVEPTADFFTISVSDEIQRSAPLPFYIIINPTNDE
VPSLLLGNFSVMEGGMKDLSPDILNVVDVDIPVETLTITILVPPAHGTLLNGIYGLEMSR
YKSLSPEDLNRTLAVLSFTIQELQQGMKIMYMHDDTETLKDTFTIQLTDGGHTVQRTACV
RIIPVNDEKPRLLKNAGVDVQTLEKKVISSVVLEAEDHDTPDNQLYFILNAGPRFGLLQL
LTEEGWIDLSPGQNFTQEDVEMNRLRYTHTKIVGFKGHDRLHFVLSDGENTSPPQTFFIL
VRIVQKGDIALITKPVTLMEGERVTLTTDILMATDSGSASDELIYTVSVLPAHGHLHMVQ
TPGVPVFSFTQMDVAANRMCYTHDNSRFADRDSFSFVVTNGVTSRSGSVLFIVEHSDRIP
PTLNINKGLLLTEGTVKIISHEHLKLNDPDTVLDNLTYIVTQGPRYGKLLWRGFPLSKPR
FTQADINNMDLAYHHLNGRAKIDRFTFQPTDGSNTGYLEYGQLKREPAVFTIQIEILDKT
PPNIVNKGIPSAVESIQDGKQGIYITSKELQATDPDSPDDTLEFTILRPPHFGYFENALT
GAYIKGRFTQKDVNQKAVRYVVPVDMEVTSDSFEFQITDPAGNTMLPEVMELRWSRVELS
ASCYRVCENAGTLGVQVVRSGNSVDPAYVGIQVEEGTAKVGKDFTHSSASLIQFDPGVHV
KMWNIHLKDDGLEENHEKFEVILKAPKNAVLGQRNKATVEIVDPRNGRCNQDDLIVEEDD
TEHPFLSPPNVQEPEPALVEEFTPDPRTRIFSDNYPQRGDVPYRTQFSHFGEGEAWEQLR
ILGRNRHRVHLPEVDNRNQERVWTFHGLFPVRREEKAPIPRVHSELEITPIWSWSGYSAD
SESVETPQRDSASFAMNSGVQQHKSQKSVSIGCPNGWTHHRRNCYILGPGIASWSSAQHA
CMLFESHLTSVHSKTDMKWMWKFAGKQAYWIGLTGSHEKWSWTDGRPLTFSKLKKGPGTN
HQDPNSLTATCVLVQSQKMWIPKSCINGSEHRYICSAPAQIS
NT seq
6429 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgactttctttattttcaccgttaccttgagctccctatggacacatgcacaa
ggttcgagtctggttcaggtaaacacaggcctccaggtaacaaggggccgatctgtattc
gtcacagcaggtgtactcaagttccgctcgatgggggcgactgaggcctgcaaggtggag
gtggtggtcactgagcccgtcacacagagagtggggaagctcacgcctcaggtctttgat
tgtcagttcttacaagatgaagtgaagtatgttcacaacggcagcccactattagaggag
gacacagtcatgctgagggtctacaggtttacagacacagtgactttcgttgagactgtc
ttgcttagggtcaaggttgtagaacctcagagaagcttaatagagttcggaagtgtccct
ctggtggttcctgagttctacgggctctccaacaccatcaacagcactgtcctcaccttt
aaaacccaggctggtgtggtctgcaccgtccgtcttctaagctcagagatcaacatttca
atgctcggtcaactggtggttgaggatcacacaactgtacaggcgtctgaggctggacca
agaatagggcggcatactggaaccccctgtccaggaaacaaggcatgtgaccacaataca
agcgaagtagagttcttgaagacagattgtgcggcgttcctcacttcaggtctgaagtac
cagcacctcagccctccatcacctgagatcgattatgtccccatcagggtggagttcagg
gaccagtcttcacgagctttgctggagactgagaatatctggttaccagtactgattcag
ggtgccatgcagaatcaaccccctcatgctgccttcatgtcgatgttcatcctggaggtg
gatcagttcatcttgactcccatgacgaccgctgccctggatgccaaagacgatgagacc
cctcaggctcagctgatctttaacgtgaccaagccaccagcggaaggatatataactcat
ttggatgatcacaccaaagtcgcctcctccttctcatggcaagatctgaatgagatgaag
attgcctatcagccaccaaacagcagctatacagccaggagaaattatgaggttgagttc
gaagccattgacggctcatttgcggcaagctcaccaatcctgatgcacatctccatccgt
acagcagagaccaactcccctcgagtctcatggaatatgggattggatctgttggaaggc
cagtccagacccatcacttgggagaacctacagattgttgataatgacaatatagatgct
gtgacactcatcgctatggatgggcctctaaatggacacttaagtgttagaggtggcaaa
ggtttcatgtttaaggtgaaggatctcagagagggggttgtggtctatcaccactctgac
agcgacaccaccagggactacatcgtcttccgcatcacagatggccgccacagcatcaga
cacaaattccccatctacgtgcttccaaaagacgacacccctccttttctcatcaataat
gtggcctttgaggtccaagagggcggttctgttcgggtggaagagtacatgctaatggcc
tcggacttggattccagcgacgactatattcagtatcagctgatcactttacccagagct
ggacagctggtgaaaaaaacgtctagacatgaaccaggtgtcccagttaagagtttctta
cagagggacctgtttcagggcctcatctactacaggcatttaggggaggaagtgtttgaa
gactcctttgatttcatcctctcagatgcccgtatgcctccaaatctgtctgacagacat
acggtggtgatccatgtgtttccagtgaaggaccagttgcctgtggaagtttctggaacg
gtccgctccatcactgtgaaagaaaccgaggtcgtttacatcactcagagccaactacac
ttcagagatacagagaatccagatactgacctcatgtatgtgatcactcgtccctgtttc
agtccgggaaacactagactatcagatgcaggcaggctgttttatactgacagcacaaat
gcgatgaaaaaagacgcaatggttccagtgctcaagtcattcacccagcatgcagtgaac
catcacaaagtcggttacatgcccccaatagaggatattggtcctgaccccctctttgtg
cagtttgcattttctgtaagtgaccagcagggcggcgctctcacagggctcactttcaac
atcacagtaacacccgttgacaaccaagctccacaaatgttcactaacttgctgagggtc
gaggagggtggcggtagtttcttgatgggggaacacctgttggtgcaggatgtggacagt
tcagaagatcagctcagggtacacgtgaagactcagccacagcatggaagactggagctg
cagggcaccacactgatggaaggagacggctttagtctgcaggacctaaaagcattgagg
gtcagatatattcatgatgattcagaaaccttgaaggatagcattggactcaccatcacc
gatggaatcaactcggcgaatggagagcttttagttcagatcttgcctgtgaacgacgaa
cccccaaaattaggttcagatttaagagctgaactgtcatgcaaagagggcggtcgcgtc
cagattacagttgagtacatctcggctacggatgaggacagcgaggatactcgtctaaca
tacatgttggcccgaacacctgcacatggggttctacagcgaaatggagtcactgtggac
aagttctctcagctggatgtgctcaatggactcatcttctacctgcacacaggtggtgag
attggtccagatcctgtgtcagacacagtcacactcatagtgtctgatggagaggctgga
ataatggatggctgttgccccgaggatgctctacccccacctgtccccctgcatgggaca
cttccggtctatgacctcaacatcactgtggtgcctgtcaacaatcagatccctgccata
acactgggtggtatgtttctggtagatgagggttccagtgcatgtttgtgtgggggggtg
ttagaggccactgatcctgacagtcatccggatcaactcatctttcacttggtgacccca
ccgcaatatggattcctggagaatgttctcccgtctcctggctttgagaaaagcaatgct
ggactcagagttgtttcttttagccagcttcacctcagctcagggtttatcaactatgtc
cagtcattaaaccacggcgtggagcctacagccgatttcttcaccatcagcgtcagtgat
gagattcagagatctgcaccattgcccttctacatcatcatcaaccctaccaacgatgaa
gtgccatcactgctgcttggcaacttctcagtcatggaaggagggatgaaggacctcagt
cctgatattctaaacgtagtggatgttgatatcccagtagaaacacttacaatcaccatc
ctggttcctcccgcccatggaaccctcctcaatggcatatatggtcttgagatgagtcgt
tacaaaagcttgagccccgaggacctaaaccgaacattggcggttctttcttttactata
caggagctacaacaaggaatgaagatcatgtatatgcacgatgacacggaaaccctcaag
gacactttcaccatacagctgacagatggtgggcacacagtccagaggactgcgtgcgtt
cgcatcataccagtcaatgatgaaaagccacggctactaaaaaatgcaggtgttgatgtc
caaactttggagaaaaaagtaatctctagtgtggtgctagaagcagaggaccacgacact
cccgacaaccaactttactttatactcaacgcaggtcccagatttggccttcttcaactc
ttgacagaagaaggatggattgatctgagtccaggtcagaatttcacccaggaggatgtg
gagatgaaccgcctccggtacactcacactaaaatcgttggcttcaaaggtcacgacagg
cttcactttgttctcagtgatggggaaaacacatcacctccgcagactttcttcatcttg
gttcggattgttcaaaaaggcgacattgctctcatcactaaacctgtaaccctgatggag
ggagagagagttaccctgaccactgatattctgatggccacagacagtggaagtgcgtca
gatgagctcatatatactgtatcggttctacctgcacatggacacctgcacatggttcag
actccgggggttcctgtgttctctttcacccagatggacgtggctgccaaccggatgtgc
tacactcatgacaacagccgctttgctgaccgcgattctttcagctttgttgtcaccaat
ggcgtgacctccagaagtggcagcgttctgttcatcgtggagcacagtgaccgtatccct
cccaccctgaacattaacaaaggccttctgctcacagagggcactgtgaagatcatatcc
catgagcacttgaaactgaatgatccagacacagttctggacaacctcacctatatcgtt
actcaaggcccacgatatgggaagttgctctggagaggatttcccctttcaaagccacgt
ttcacgcaagcggacattaacaacatggatctagcttaccaccatctgaacgggcgagct
aagattgacaggttcacctttcaacccactgatggatctaacacgggttatttggagtat
ggacagctgaagagagagcctgctgtgttcactatacagattgagatactggacaagaca
ccacccaatattgtaaacaagggcattccaagtgctgtggagagtattcaagatggcaaa
caaggcatctacatcacttccaaagaactgcaagccaccgacccagacagccccgacgac
acacttgagttcacaattctgaggcctccacatttcggttactttgagaatgccctcaca
ggtgcctacatcaaagggcgcttcacccagaaggatgtgaaccagaaggcagtgcgctat
gtcgtacctgtggacatggaagtgacatcagacagctttgagttccaaatcacagatcca
gcaggaaacacaatgcttcctgaagtgatggaactcaggtggtcccgtgtggagctatct
gcttcctgttatcgtgtttgtgagaatgcaggaactctcggtgtgcaggtggtacgcagt
gggaacagcgtagatccagcgtacgtcggcatacaggtggaagagggcacggccaaggtt
gggaaagacttcactcacagttcggccagtcttatacagtttgatccaggtgtgcacgtc
aaaatgtggaacatccacctcaaagatgacggtttagaggagaaccatgagaaatttgag
gtgattctaaaagctccaaaaaatgcagttttgggacaaaggaacaaggccacagttgag
attgtggatcctagaaacggcaggtgtaatcaagatgatcttattgttgaagaagatgac
acagaacatccttttctaagcccaccaaatgtccaagagcccgaaccagcactggttgag
gaattcactccagacccaagaaccaggatcttctcggacaactatccgcagagaggggac
gtcccatatcgtacccagtttagccatttcggtgaaggagaagcttgggaacagctgagg
attctgggtagaaacagacacagagtgcatctgccagaggtggacaacagaaatcaagaa
agagtttggacgtttcatgggcttttcccagtgagacgagaggaaaaggcgcccattcct
cgtgtccattctgaactggagatcactccgatctggtcctggtctggatattctgccgat
tcggaatcagtcgagacccctcagagggactcggcctcatttgcaatgaattcaggtgtg
caacaacacaagtctcagaagtctgttagcattggttgtcccaatggctggactcaccat
cggagaaactgctatattttgggccctggtattgctagctggagcagcgcgcaacatgct
tgtatgctgtttgaaagtcacttgacaagtgtgcactccaagactgacatgaagtggatg
tggaagtttgctggaaagcaagcgtactggatcggactcacaggcagtcatgaaaagtgg
tcttggactgacggcagacctctgacattctcaaaactcaagaagggaccagggaccaac
catcaggatcccaacagcttgactgccacctgtgttttggtccaaagtcagaagatgtgg
atcccaaaaagctgtattaacggatcagaacacagatacatttgttcagcacctgcacaa
atcagttaa
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