Triplophysa rosa: 130548990
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Entry
130548990 CDS
T09216
Name
(RefSeq) embryonic polyadenylate-binding protein-like
KO
K13126
polyadenylate-binding protein
Organism
tros
Triplophysa rosa
Pathway
tros03015
mRNA surveillance pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130548990
09123 Folding, sorting and degradation
03018 RNA degradation
130548990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130548990
03041 Spliceosome [BR:
tros03041
]
130548990
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130548990
mRNA cycle factors
Stress granule specific factors
130548990
Spliceosome [BR:
tros03041
]
Complex C
Other components
Complex C specific factors
130548990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_Nup35
RRM_RdRP1_2
RRM_10
RRM_5
RNA_bind
RRM_3
Motif
Other DBs
NCBI-GeneID:
130548990
NCBI-ProteinID:
XP_057182089
LinkDB
All DBs
Position
LG25:7305982..7308143
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AA seq
427 aa
AA seq
DB search
MASSACARVASLYVGDLHPEVSEVMLYERFIPFGPIQSTRVCRDRSTCRSLGYGYVNFVN
RSDAVHATDILMFDLLMGRPMRIMWADRNPALRITGVGNIFIQGLAKNITSLTLHDTFSR
FGTILSCKVVADENGSKGFGFVHYVTYEAAERAIQTLNGMMLNDQLVSISHFRSFQERQS
NPERAMKNYKSLFPGVHLYVNNLPYSWTDHQLHRAFSPFGTVTNAKVVRNGGRSKGFGFV
CFASREAAAQAITAMNGRVIANRRLNVAFSRVKDQDTSVSDCESPSVVTQTLLPSGRFGS
VVPQAKTGHQLTRHLQLESCCRRDAACLLSKCESLVSLVAPLLLDTLVSHTPVDALQRVN
QELSELKSDPVIDAPGTSDTFSAVTSPLSGDFGAVIPKAHSSAAQQFSSCLVFSRRWFAD
VALPQCE
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcagcatgtgctcgcgtggcctctctgtatgtcggtgatcttcacccggag
gtctcagaggtcatgctgtacgaaaggttcatcccgtttggcccgattcagtccacccga
gtgtgtagagacagaagcacctgcaggtctctgggctacggatatgtgaactttgtcaac
cgttcagatgccgtgcatgcaacagacattttgatgtttgacctcctcatgggtcggccg
atgcgcatcatgtgggccgaccgaaaccctgcgttgaggatcacaggtgttggcaacatc
ttcattcaggggctggccaagaacatcaccagcctgactctacacgacaccttctctcgt
ttcggcaccatcttatcttgcaaggtggttgctgatgagaatggctctaagggatttggt
ttcgtccattatgtgacgtacgaagccgctgaacgagccattcagacgctcaacgggatg
atgctgaacgatcagctggtgtccattagtcacttcagatcgtttcaggagcgtcagtca
aaccctgagcgcgccatgaagaactacaagagtctcttcccgggggtgcatctctatgtt
aataatctgccctacagctggacggaccaccagctgcatagagcgttctcaccgtttggg
accgtcaccaatgcaaaggtggtgaggaacggtggccgcagcaaagggttcggctttgtg
tgttttgcaagccgtgaagccgcagctcaagccattacagcaatgaacggacgggtcatt
gccaacagacggctgaatgttgccttctcgcgggtcaaggaccaggatacgtctgtgtcc
gactgtgaatcgccctccgtggtcactcagacgctgcttccttctggacgctttggttcc
gttgttccacaggctaaaactggtcatcagctcaccagacaccttcagcttgagtcctgt
tgtcgccgggatgcagcgtgtctcctgtctaagtgtgagagtcttgtctcgctggtcgct
ccactgctgttagacacgctggtgtcccacacgccagtagatgcactgcagcgtgtgaac
caggagctgtcagagctgaagtctgatccggtcattgatgctcctggaacatcagacacc
ttcagcgctgtaacctctcctctgtctggagacttcggtgctgtcattccaaaggctcat
agcagtgccgctcaacagttctccagctgtcttgtgttcagtcgtcgctggtttgcagat
gttgctctgcctcagtgtgagtag
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