Triplophysa rosa: 130551952
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Entry
130551952 CDS
T09216
Symbol
acanb
Name
(RefSeq) LOW QUALITY PROTEIN: aggrecan core protein
KO
K06792
aggrecan 1
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tros00535
]
130551952 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130551952 (acanb)
04091 Lectins [BR:
tros04091
]
130551952 (acanb)
Proteoglycans [BR:
tros00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
130551952 (acanb)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
130551952 (acanb)
Lectins [BR:
tros04091
]
C-Type lectins
Lecticans
130551952 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
Chordopox_A33R
I-set
PGDH_inter
Motif
Other DBs
NCBI-GeneID:
130551952
NCBI-ProteinID:
XP_057185981
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All DBs
Position
LG3:complement(8034876..8046651)
Genome browser
AA seq
1397 aa
AA seq
DB search
MSLTLLLLCSCLSVISSTPVFFGDMADQDSTISVSIPLEQPLRPLLGGSMVIPCYFQDNV
VRDPGATTISPLSHRIKWSYIYKGTISLILVATGGLVKVETDYLDRVHMVNYPMVPSDAT
IEISELRSKDSGTYRCEIMQGIEDNYDSVEMQVQGILFHYRAISTRYTLTFETAKAACIQ
NSAVIATPAQLQAAFDDGFHQCDAGWLSDQTVRYPIHEPREPCYGDKENFPGVRTYGVRD
VNETYDVYCFADKMIGKVFYSFSAEKFTFSEAEEQCAKLGAQLATTGQLYLAWMTGMDVC
NAGWLADRSVRYPINTRRPQCGGGLLGVRTVYLFPNQTGYPHPDSRYDAICYREQEVKVS
KTSPFPEIYTITDSGFSVATVTLSPLDYTQQVTTNEEARGETEETLNITSTEDPLSISPN
TTETSSLVEEEVIEVATAQPDLGYDITKDNVTTVHPIVPPFSVDMTGSGSASGHPDHSSG
DVSGSGSASGHPHHSSGDASGSGSASGHPGFSSGDASGSGSASGHPGFSSGDASGSGSAS
GHHGFSSGDASGSGSAXGHPDHSSGDVSGSGSASGHPDQSSDDVSGQGSASGHPDFSSGD
ISGSGSTSGHLDLSSGDVSGSSLTSGLPDLSSGYVSGFGSASGLSSGYISGLGSASGYLD
LTSGDISGSSSGSGFHAFSSGDISGSGFPQFSSGDMSGSGTPSGDISGSGQSGDESGFFV
QFGESADTLILGTSASGSAQEAKEGSSVFITLGVESGDWESGEVSGLYHEGSWASGLPSG
LGSGISGSGVSGLSSGLWSEVSGSGAIGLPSGLDSEVSGAGAIGLPSGLDSEVSGAGAIG
LPSGLWSEVSGSGASGLPSGLDSEVSGAGAIGLPSGLDSEVSGAGAIGLPSGLWSEVSGS
GASGLPSGLWSEVSGSGASGLPSGLNSEISGLGTSGLPLGFGSGIIGSGSSEIYSGAELS
GSGFFGVSFLDTEIIDLTARPSGEQELSGVSPFGLNYVSGSGSHSSSSGSGDKSDHFERL
NDKIIILTDDEIIEFVSGPTTRTEQGRGSVEVSGEGSGQEHSADGISGSPNRNSYEHHLI
SSGTDDLLAEEIGQLSSTTEAFDATDLSPVETTVSTISDFITSPSVSLQTPESIEEPTVT
DAFANPCEPNPCGDGSCSIQHGIVVCQCPPGFSRENCSISIRGCAEGWMEFMGSCYIHYD
ERETWAGADQRCQELNSHLVSITSQQEQDFVRTQAYNYQWIGLSDKEAENEFNWTDGSIL
KYKNWRPNQPDNYFSTGEDCVVMIWHEDGQWNDVPCNYHLPFTCKTGPVTCSSPPEVRNA
RVVGSRKERYTVNSIIRYKCDSGFTQRHLSVVRCMAEGQWEQPHVECIEGKTINRLRKRS
LKTRPKAVKSRTWRKIL
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgactttgcttctgctgtgctcatgcctcagtgtcatttccagcacacctgtg
ttttttggagacatggctgatcaggacagcaccatcagtgtaagcatccctttagaacag
ccactgcgccccctgctgggtggaagtatggttatcccctgctactttcaagacaacgtt
gtccgtgatcctggtgctacaaccatctccccgctctcccaccgtatcaagtggagctac
atctacaagggcacaataagccttattctggtcgccaccggaggactggtgaaagttgaa
acggactacttggaccgggttcatatggtgaattaccccatggtgccaagtgacgccacc
attgagatctcagaacttcgttccaaggactctggcacctacaggtgtgagatcatgcaa
ggcattgaagataactatgattctgtggaaatgcaagttcaaggtattttgttccactac
cgagcgatttccacccgatacaccttgacatttgagacagcaaaggccgcctgcattcaa
aacagtgctgttatcgcaactcctgctcagctgcaagcggcctttgatgatggattccat
caatgtgatgctggctggctctcggatcaaactgtgaggtatcccattcatgagccaaga
gagccttgctatggagacaaagaaaactttccaggtgtaagaacatatggagtccgagat
gtcaatgagacctatgatgtctactgctttgcagacaaaatgataggcaaagtgttttac
tccttctctgcggagaagttcacgttttctgaagctgaagagcaatgtgcaaagcttgga
gcccagctggccaccacaggacaactgtacctggcatggatgactggtatggatgtgtgt
aatgctggctggctagcagacaggagcgtgcggtaccccattaacacacgccgaccccag
tgcggcggagggcttctgggagtgcgaactgtttacctgtttccaaatcagactggctac
ccccatccagactcccgctatgatgcaatctgttacagagaacaagaagtcaaggtttca
aagacctcaccattccctgaaatatacactattacagattctgggttcagtgtggctaca
gtgactttaagtcctttagactacacacaacaggtgaccacaaatgaggaggcccgtggg
gagactgaagaaactcttaacattaccagtacagaagaccccctatccatttctcccaac
acaactgagacaagctcactggtagaagaagaagtgatcgaagtggccacggctcagcct
gacctgggatatgatattaccaaagacaatgtgaccactgttcatccaatcgtccctcca
ttctctgtggacatgactggatcgggctccgcatcaggtcatccagatcacagttctggg
gatgtatctggatcggggtctgcatcgggtcatccacatcacagttctggggatgcctct
ggatcggggtctgcatcgggtcatcctggtttcagttctggggatgcatctggatcgggg
tctgcatcgggtcatcctggtttcagttctggggatgcatctggatcggggtctgcatcg
ggtcatcatggtttcagttctggggatgcatctggatcggggtctgcatagggtcatcca
gatcacagttctggggatgtatctggatcggggtctgcatcgggtcatccagatcaaagt
tctgatgatgtatctggacaaggctctgcatcaggtcatcctgatttcagttctggggat
atttctggatcaggctcaacatcaggccatcttgatctgagttctggggacgtatctgga
tcgagcttaacatcaggtctacctgatctcagttctgggtatgtctctggctttgggtca
gcatcaggtctcagttctgggtacatatctggattggggtcagcatctggttatcttgat
ctgacttctggagacatatctggatcaagctcaggatcaggctttcatgctttcagttcc
ggggacatatcaggatcaggctttcctcaattcagttctggagacatgtctggcagtggc
acgcccagtggggacatatctggttctggccaaagtggtgatgaatcaggtttttttgtg
cagttcggagaaagtgcagacacacttattttggggacttctgcttcaggtagtgctcag
gaggcaaaagaaggtagtagtgttttcattactttaggagtagaatcaggggattgggaa
tctggtgaagtatctggactctatcatgaaggaagttgggctagtggccttccatcggga
cttggtagtggaattagcggttcaggagttagtggtctttcatctggactctggagtgaa
gttagtggttcaggagctattggccttccatcaggacttgacagtgaagttagtggtgca
ggagctattggccttccatcaggacttgacagtgaagttagtggtgcaggagctattggc
cttccatctggactctggagtgaagttagtggttcaggagctagtggccttccatcagga
cttgacagtgaagttagtggtgcaggagctattggccttccatcaggacttgacagtgaa
gttagtggtgcaggagctattggccttccatctggactctggagtgaagttagtggttca
ggagctagtggccttccatctggactctggagtgaagttagtggttcaggagctagtggc
cttccgtcaggactcaacagtgaaattagtggtttaggaactagtggccttcctttggga
ttcggaagtggaattattggttcaggatcaagcgaaatatacagtggtgctgaactgagt
gggtcaggcttctttggtgtgtcattcttagacacagaaattattgatctaaccgcaagg
ccatctggagaacaggaattgtctggagtttcaccatttggcttgaattatgttagtggt
tctggctctcactcttcatcttctggttcaggtgacaaatctgaccactttgaaagacta
aatgataagattattattctaacagatgatgagatcattgagtttgtctctgggcctaca
actagaacagaacaaggccgtggatctgtggaggtcagtggggagggcagtggtcaagaa
cattcagctgatggcatctcaggctcccctaacagaaattcatatgaacatcacttgatt
tccagtggaacggatgatctcctagcagaagaaattgggcaacttagtagcaccacagag
gcgtttgatgccactgatctgtccccagtggaaaccacagtatccaccatctcagatttc
atcacttctccttcagtttcactacaaacaccagaatctatagaggagcccacagttact
gatgcttttgctaacccctgtgaaccaaacccctgtggcgatggctcctgctccatacaa
catggcattgttgtatgtcagtgcccaccaggattcagcagggagaattgctcaatatcg
atacggggatgtgctgaggggtggatggagttcatgggcagctgttacatccactatgat
gagcgtgagacctgggccggtgctgaccagcgctgtcaagagctaaactctcacttggtt
agcataacctctcagcaagaacaagactttgtcagaactcaggcttataactaccagtgg
atcggactcagcgacaaagaagcggaaaatgagtttaactggaccgatggaagcattttg
aaatataaaaactggagaccaaaccagccagataattacttcagcacaggtgaagactgt
gttgtaatgatatggcatgaagatggccagtggaatgatgtgccctgcaactaccatcta
ccctttacttgcaaaactggacctgtcacatgttcatcacctcctgaggtgaggaatgca
agggtggtaggcagccgcaaagaacgctacactgttaattcgatcattcggtacaagtgt
gacagtggattcacacagcgccacctttctgtggtgcggtgtatggcagaaggccagtgg
gagcagcctcatgttgaatgtatagaaggtaaaacaatcaacagacttcggaagagatcc
ctcaagacacgtcccaaagcagtcaaaagtcggacatggagaaaaatcctctaa
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