Triplophysa rosa: 130552144
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Entry
130552144 CDS
T09216
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tros03400
]
130552144 (spg11)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130552144 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
130552144
NCBI-ProteinID:
XP_057186264
LinkDB
All DBs
Position
LG3:complement(1897115..1959989)
Genome browser
AA seq
2378 aa
AA seq
DB search
MLKMLNRSDVEGALEVDLLLSDHDLCDSVQIRLAKGRSVMCCLDTESKLKIKDITDSSGS
VHRLQESYTDFCWEDLSEHDRQDVNPKLLTVDSQCSLRLYGIDPHGQVSLVCESPSDTLL
ESVKDNHSDVSELRTVRLLSFMDGRCVLLVNSSVVLQIRWTEDSSHLSSCRLGLPPQTQD
ECVDYHLCRGILFLLFGSGVTYVFDSTDGKLMATVDLPSYCGGGQTDADFSPPVTFCRFQ
ISHDLNAAVTVTCHNQALAVDLNDYFRVFPDHLCCRAAPDRPLIKPVESWDHDSLLSSAH
SLSVLDTPFQTDRSWESRLSSLYIRSKAPARPAHRLPWYKDFPHVECRRASATAKLSQPS
VKPGGAVMCFHVPEGATAAMLTVSEFSAVVTFVSPGNTTLAYWDLEGESVTYHRTETPAV
PVQRSDEEHQCLLLKGSGLSAVLFCVTQEELLNRLMVFGTAGTVDSLCHLNAWGRCSIPI
HALQAGLKNHQLDTVDFFLKSKENILSPTSGFVLPDQASAVSSQTQLRNIHALCPALDLL
HSAIQDTHTEAQSRQFCEQLLSITLTFLNTQTRVLLTGTHELDVHLQECVRILDGYISDL
RGYMKKFPWPDGGAAETPACPHTPTSDAATEREWQSMSDEEVVQRAVLSRRIPHAQAFLR
RRCSVECSLEDVRKTGLRRVFTCLTRRDLQTAEMLLANMAFNVKEQLHSICVHTADRDLR
AFMVEELQRQSYLSPGEVKQVEFIKTIETLCSTPATRCSNPLDSSRVLQMTRSDPESRRL
LEEIVQDPARSSSRSLLDCVRLDWIRCWDTDAQSSVLLSRLQDSTLGSCDAVTLWSYLTC
LHDWGRVTAWVCSMTARDTETTAAPRWPALTPHIINSYSHCGEYMRNQILDLLAPQGLFV
QSEMDDFEQLLWRLGQAGGVMRDGSGPPVPQFLSSQGQEFHQRFILHCLENSLQYLLYTY
LEHYRLTPGNCPGLDDRNLFESFPWFEMMLKLQRIPRDLKDPERVFQASLTGAQVLLPGS
QASISSMLLEGHSLLALSTIMFRPGGIDQAMREGERGQDPLSRVDPQLLRMALGAYPKLK
TALFPQIGPRGASSCDISLYHLMQSLQPLDPSRLFSWQAGNVAGGTETSSEPPHFSSPHL
VSRHSLIENLDYLYYLSHRRPAFAYGVFLTQHLVNCSNVKSRLSQAVEQVFSLALLNFSS
ASVTAACVCFCELLGVCSLKLRVDLKALNLILKLWSRNYEDGAEASFRQMLVEKAGKLVS
DEKHTAQELLVHLEEAVRDALETKGVGRSSYEAAQDWALPVKFCHLHALPLSSAYPQDCA
CDGQWINFLLFVQLHSYPPQQVRSLAAGFSPALQAHISLAFQDLPAISPHTGLEEQGTVR
DDNPEASGELFQVLLKSQEKASPWRYLLSESVRHHSPALSVLAACHQGAELLQCLCVWIL
TSVEDEISEEATAHIDENPSHHVWNLHDLSILWKTLLHRSKIRPLIRGFQLFQRESPLIY
MLNMYELCYDYKDYQRGKDKLLHFQKCLLNLRSSSVVLSCDVLPVQWVESQASVLLLVLL
KQSRTQYELRRLLQLLVDMERLLKSNGPDFKKLSQLSQVLSDTPVPLSPCLLEDYSTSAL
QGECRKMLEQLQDTGLFTQARKVAQLAELPVDCLIINELLRDLSALKAKRQWDRQETRLG
FWRKCHHQLKTDCVDPETACQFFLSQAEEPLQSDSEVIQLQERCLLLGLAGHWLSCRESP
LPVLRLAQLEKRQWEYRIRWLVLRTALERESLFAPSALSEDSFENLLKEFSFSKMAVVND
QAHLSLEGLPASEDDCALSEQDRKALSALVGQLLNEGSVNEASRVCRYFGSFHRDMWLVL
RCRGLACGELQPGLPELHSPDGESRRSLPSSPSTSSLSSFVVVSSPEDAVLVQLKQLVDQ
CCHGKSYCKQVLSLYELSKELQCTYAEISSEEPEAVLRKVLLSQQSDRCKKAQAFISVQG
LRSDAVAQLISSAVVDGLLSSSHEGQTGERLMYGPVDSREEFIQLAKLCGDPNLVGSKLL
EIISTVPLSELSCTVEILILAHDCFSLTCNMEGIVRVLQAARHLSHTHLAHGEGYGLLVR
LLTGIGRYNDMTYIFDLLHQNHRFEMLLRKKVESNVRLKTALLDYIKRCLPGDSEKHNMV
ALCFSMCREIGENHEAAARTQLKIIESQPWAITGDLKNTLVKVLTLLKDAAESYSKDSCV
RQAVKCVKMAKLVTLQLHFLNHGQELRVINLRPSDLQSAIVSLPRCYQAFVLAEAYDHSP
DWAEVLFQKIIVNGEFGYLEEFKRHRSLPTSLFEEISKKMLHHKPPASSSQNLKRLLSHC
EDVYTHYKLAYEHKFLDVANMLLQDSKTNGFLNDRLGT
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagatgttaaacaggtctgatgtcgagggagcactggaggtggatttactgctg
tctgatcatgatctgtgtgacagtgttcagatcagactggctaaaggcagatcagtcatg
tgttgtttggatactgagagtaaactgaagattaaagacatcactgacagcagtggatca
gtgcacagactgcaggagtcttacacagatttttgttgggaagatctgtcggagcacgac
agacaagatgtcaacccaaagctgcttaccgtggactctcagtgcagtctgagactttat
gggatagatccacatggtcaagtgtctctcgtgtgtgagagcccttcagacactttactg
gagtctgtcaaagacaaccattcagatgtgtcagagctgaggacggtgagactgctgtca
ttcatggatggccgttgtgtgctgctggtgaactctagtgtcgtgctgcagatccggtgg
acggaagactcctcacacctgtccagctgtcggctcggtttacctcctcagacgcaggac
gagtgtgtcgattatcatctctgccgcggaattctgttccttctgttcggttctggagtc
acatatgtgttcgacagcactgatgggaaactcatggcgactgtggatttaccgtcgtac
tgcggcgggggacagacagatgcagacttttctccacctgtaactttttgtcgtttccag
atctcgcatgatctcaacgccgccgtgaccgtcacctgccacaaccaagcgcttgccgtt
gacctgaatgactacttccgggtgtttccagatcacctttgttgtcgtgcggcccccgat
cgtccgctcatcaagcctgtggaatcatgggaccacgacagccttttaagctccgcccac
agcctgtcagtcctggacacgccgttccaaacagacaggtcgtgggagtctcgtctgtct
tctctgtacatccgttctaaagccccggcgcgtccggctcacaggctaccctggtacaaa
gatttcccccacgtggagtgccgtcgggcatcggccactgccaaactctcccagccctcc
gtgaagccagggggcgctgtgatgtgtttccacgtgccggagggagctacagcagcgatg
ctgaccgtctccgagttctccgccgtggtcacgttcgtctccccggggaacacaactctg
gcgtactgggacctggagggtgaaagtgtcacataccatcgcacagagacccctgctgta
cctgtccagcgctcggatgaggaacaccagtgtctgttactgaaggggtctggtctgtct
gccgttttgttctgcgtgacccaagaggaacttttaaacaggctgatggtttttggcacc
gctggtacggtcgactcgctgtgccatctgaacgcctggggacgctgttcgatccccata
cacgctctgcaggccggactgaagaaccaccagctggacacggtcgatttctttctgaag
agtaaagagaacatcttgagtccgacgtccgggttcgttctgcccgatcaagcgtccgcg
gtctccagtcaaacccagctgaggaatattcacgctctgtgtccggcgctggatctgctg
cactcagcgattcaagacacgcacacggaagctcagagtcgacagttctgcgaacagtta
ctgagtatcacactgaccttcctcaacacacagaccagagtcctcctcaccggaacacac
gagctggacgtccacctgcaggagtgcgtgcggattttagacggctacatttcagacctg
cggggttacatgaagaaatttccatggccagacgggggcgccgctgaaacgcctgcgtgt
cctcacaccccgacgtctgatgcagctacagagcgggagtggcagtcgatgtctgatgag
gaagtggttcagcgtgctgtattgagcagacggattccacacgcgcaggctttcttgcgc
agacgctgttctgttgaatgcagtctggaggacgtcaggaagacaggactgcgacgcgtc
ttcacctgtctcactcgcagagacctgcagacggccgagatgctgctcgctaacatggcc
tttaatgtgaaggagcagcttcacagtatctgtgttcacactgctgatcgggatctaagg
gcgttcatggttgaagagcttcagaggcagagttacctgtcacctggggaggtgaagcag
gttgagttcattaaaaccatcgagactttgtgctcgacgcccgcgacaagatgctcgaac
cctttggactccagcagggttctgcagatgacccggtcggatccagagagcagaagactt
ctggaggagatcgtacaagacccagcgcggtcctcctccaggtccttactggattgtgtg
cgtctggactggatcagatgctgggacacagacgcacagagttcagttcttctgtccaga
ctgcaggactccactcttggttcatgtgatgccgtcacgctctggtcgtatctcacctgt
cttcacgattggggtcgagtcaccgcatgggtctgcagtatgactgcgagagatacggag
accaccgctgccccccgctggcctgcgctgacaccacacatcatcaacagctacagccac
tgcggagaatacatgcgcaatcaaatcctggacctgctcgctccgcaggggctgtttgtc
cagtcggagatggatgactttgagcagttgctatggcgactgggtcaagctggaggagtg
atgcgggatgggagcggtccccccgtcccacaattcctctcttcacaggggcaagagttt
caccagcgcttcattctgcactgtctggagaacagtctgcagtatctgctctacacgtac
ctggagcactacaggttaactcccgggaattgtccaggtctggacgacaggaacttgttt
gaaagtttcccctggtttgaaatgatgctgaagttacagagaatccccagagacctcaaa
gatccggagcgggtgttccaggcgagtctgacaggagctcaggttctgttgcccggcagt
caggcgagcattagcagcatgttactggagggtcacagtctgctcgccctctctacaatc
atgttcagaccgggcggcattgaccaggcgatgcgagagggagagagaggtcaggaccct
ttgagtcgtgtggaccctcagctgttgagaatggctctgggtgcgtatccgaaactcaaa
acggctcttttcccccagatcggtccccgcggggcgtcctcctgtgatatatccctctat
cacctcatgcagtctttgcagccattggatccttccagactcttcagttggcaggcgggg
aacgtcgcgggcggcaccgaaacatcctccgagccgcctcatttctccagccctcatctg
gtcagcagacactccctcattgagaacctggactatctgtattacctgagccacaggcgc
ccggcgttcgcctacggggttttcctcacacaacatctggtgaactgcagtaacgtaaag
tcacggttatctcaagccgtggagcaggtcttctctttagctctgttgaacttcagctcc
gcctccgtgacggcggcgtgtgtgtgtttctgcgagctgctaggcgtgtgtagtctcaaa
ctgagggtggatctgaaagcgctcaacctcatcctcaaactctggagccggaactatgag
gatggagccgaagcctcgttcagacagatgctcgttgaaaaggccggtaagctggtgtcc
gatgagaaacacacggctcaggagctcttggtccacctggaggaggcagtcagagatgct
ctggagacgaaaggcgtcggtcggtcatcatacgaggcggcgcaggattgggctcttcct
gtgaagttctgtcatctccacgccctgcctctaagctccgcttacccgcaggactgcgcg
tgtgatggacagtggatcaactttctgttgtttgtacagttacacagttatcctccccaa
caggtgagatctctggctgccggtttcagtccggctcttcaggctcacatctctttggcg
tttcaagacctcccggccataagccctcacacgggtttggaggagcaggggacggtcaga
gatgacaacccagaagcttctggagaactgtttcaggttctgctgaagagtcaagagaaa
gccagtccctggagatatctgctgtctgaatccgtccgtcatcacagtcctgcgctctcc
gtactcgccgcctgccatcagggcgcagaactgcttcagtgtctctgcgtttggatactg
acgtccgtagaggacgagatctccgaggaggccaccgctcacatcgacgagaaccccagt
catcacgtgtggaacctccatgacctctccatcttatggaagaccctcctccacaggagc
aagatcaggcctctgattcgtggattccagctctttcagagggagtctccactgatttac
atgttgaacatgtatgaactctgttacgactacaaagattatcagagaggcaaagacaaa
ctcctacatttccagaaatgtctgctgaacttgcggagcagcagtgtcgtgttgagctgt
gacgttctgccggtccagtgggtggagtctcaagcgtcggttcttctgttggttctcctg
aagcagagcagaactcaatacgagctcagacgtcttcttcagctgctggtggacatggag
cgtcttctcaaatctaacggtccagactttaagaagctcagtcagttgagtcaggtgctc
tcagatacgcccgtcccgctgtctccgtgtctcctggaggattattccacctccgctctg
cagggggagtgcaggaagatgctggaacagctgcaggacacgggactcttcacgcaggcc
aggaaagttgcgcagttggccgagctgcccgtcgactgcctgattataaatgagctcttg
cgagatctgtccgctctcaaagccaagcgtcagtgggacagacaggaaacccgtctgggg
ttctggaggaagtgtcatcatcagctgaagacggattgtgtcgaccctgagacggcctgc
cagttctttctgtctcaggctgaggagcccttgcagtcggattcagaggtcattcagctt
caagaacgctgtcttctgctgggcctggcgggtcattggctgtcatgccgtgagtctccg
ctgcccgtcctgcgtctggcacagctggagaaacgacagtgggaatatcgcatccgatgg
ctggtcctccgcacggctctggaacgagagagtttgttcgctccctccgcgctctcggaa
gattccttcgaaaacctcctgaaagagttttccttttccaaaatggccgtcgtaaacgac
caggcgcatctgagtctggagggtcttccggcgagcgaagacgactgcgcgctgtccgaa
caagaccgtaaagctctgagcgctctcgttggccagctgctgaacgaagggagcgtgaac
gaagcgagtcgagtgtgtcgatacttcggctcgtttcacagagacatgtggctggttctg
aggtgtcgtgggttggcgtgtggagagctgcagccgggactgccggagcttcacagtccg
gatggagaatctagacgcagtttgccatcatctcccagtacgagcagtctgtcgtcattt
gtggtggtttcatctcctgaagatgccgtcttggttcaactcaagcagctggtggatcag
tgctgtcacggcaagagttactgcaaacaggttctcagcctctacgagctttcaaaggag
ctgcagtgcacatacgcagagatctcgtctgaagaacccgaggcggttctgcggaaggtt
cttctgtctcagcagtcggatcgctgtaagaaagctcaagcgttcatcagtgttcagggc
ctgcgctccgatgccgtggctcagctcatatcttcagctgtggtggacggtctgctcagc
tcatctcacgagggtcaaacaggagagcgtctcatgtacgggccggtggacagcagggag
gagttcattcaactcgccaaactgtgtggagatccaaacctggtgggaagcaaactgctg
gagatcatctccaccgttcctctgtcagagctcagctgcactgtagagatcttgatttta
gctcacgattgcttcagtctcacctgtaacatggagggtatcgtgagggtcctgcaggct
gccagacacctgagtcacacacacctggctcacggcgaaggatacggactgctggtgcgt
ctgctcacaggtatcggcaggtacaatgacatgacgtatatctttgacctgttgcatcag
aaccatcggtttgagatgctgctgaggaagaaagtggaatcgaacgtcagactgaagacg
gccttgttggattacatcaagcgttgtctgccgggggacagcgagaagcacaacatggtc
gctctgtgtttcagcatgtgccgtgagatcggagaaaaccacgaggccgctgcgagaaca
cagctgaagatcatcgaatcccagccgtgggccatcactggagatctgaagaacacttta
gtgaaggttctgactttactgaaagacgcggctgagagctactcaaaggactcgtgtgtg
cgtcaggctgttaaatgtgttaaaatggccaaactggtcactcttcagttgcatttcttg
aatcacggacaggagctgcgtgtcatcaatctgaggccgtctgacctccagagcgccatt
gtttctctaccgcgctgttaccaggcgttcgtgttggccgaagcgtacgaccacagcccg
gactgggcggaggttctgtttcaaaagatcattgtgaacggtgaattcggctacctggag
gagtttaaacgccacagatcgctgcccaccagcctgtttgaggagatctcgaaaaaaatg
ttgcatcacaagccgccggcgagttccagtcagaatctgaagaggcttttgtctcactgt
gaggacgtttacacgcattataaactcgcgtacgagcacaagtttctcgatgtggcaaac
atgctgcttcaagactccaaaaccaacggctttctgaacgacagactcggcacttaa
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integrated database retrieval system
