Triplophysa rosa: 130552626
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Entry
130552626 CDS
T09216
Symbol
dchs2
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-23
KO
K16507
protocadherin-16/23
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tros04515
]
130552626 (dchs2)
Cell adhesion molecules [BR:
tros04515
]
Cadherins
Cadherin related
130552626 (dchs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_4
Fibulin_C
Cadherin_pro
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
130552626
NCBI-ProteinID:
XP_057187007
LinkDB
All DBs
Position
LG4:complement(13558809..13617991)
Genome browser
AA seq
3263 aa
AA seq
DB search
MPQNFKNVINAFQCFLSKMWFDSRTLLRFLVATLLCASCCAQVFNLSLSIEEGLPAKTVV
GDIGAGLPAKIRNSGFFISESKDSHVFKDLEVDGDTGIISTAVVLDRERVEKYEFSAATL
TRDVIKVIIEVKDINDNFPVFPAETIRLNVSELSPPGTRFELEGAQDQDKGDYGIQGYRI
KDTRNIFTVENRNNGGNVFSLDLILKGRLDRESTDLYGLTIEAFDGGLPPKTGQLQVHVT
VLDENDNQPVFNQSEYHAVILESSPLMTSVCQVFATDPDLGSNGKVTYNINRRQSDPNEF
FIIDSSSGIISVNKLLDYEKQAFFEFIVTAWDSGTQPESSNTFVVIKVLDVNDNHPNISI
LFLNEAGAPEVSEGAEHGEYVARIAVSDPDLGEVKKLNVLLQGGNSMFTLKPTDDFLYVL
CVDGELDREVKDLYELTVIASDFGLPPLRTETTFQVQITDVNDNPPVFEKNTYEESIAED
VHEGVALLQVKATDRDQGGNSVIVYSIVQSEMEHLFDIDPASGVITVAASLDYEKQSELK
FLVVATDCGSPSLSTTATVSVTTHLEDVNDNKPIFQQQLYNLTIKEHTAIETCLLQVTAT
DADDAEFGKVQYFLCDGYSGKDAHPLFKINSVTGEICVAQDIDYEDGIVTFDLLIKAEDQ
DGLNSQTFVHIDVEDVNDNGPVFTPERYVTSLSSHAQPGTKLLSVFASDQDSGNYGEITY
ELLPGDSASLFNVDQSTGAVYLNSSLSQVRSSSVKLSVSARDGGGLSTINPANITVNILH
SQQPLALFQKPHYTFFISEDAPVGSSVGSVQAVTPANSLEVVSYVISSGDPQGLFTVDTH
TGIITTNKLLDHESISRVLLTLQFHTGTLPIYSSAQVNISITDVNDNPPVFPKNSERITL
SHNTPPGTPLFLAHAEDSDSGLNGRIHYVLHPESQLFTIHPHLGTLTLNSDLSGDSRQRY
EFTIIAKDEGQPSLNSTLDLIIEMDKSDLAEETLSFETLVYQVEIGESAIKDNRVIQVRA
YSSRTQSRGTHALTSPVIKYSLEPITVVPPFRIHPESGWMFVSQRLDYETQPKYRFSIYA
TVHDGSMEATATAAVVVTVQDENDNAPVFSRDVYFFSVQEGPAPHGLIGTVKATDRDSQN
NGMLSYILLSDGKYFSINSRTGEIINLVALDREEQAQHVLRVMVTDQGRPRLNSTTVVYI
LVTDINDNPPQFMHLPATKELTIQVWAGIPVGSVIISMFAKDQDAGENGTVRFLIKDDRM
GHFSSDSRSGDIKVTERFSSNPQMNYTLKVVAIDSGSVPLEETAVVHIQVYADFQGFRHF
TVQEDVKIGTVIGSLGISMAPDTQLRYSIVEGDGKLQFSIQSGELYVAQHLDYEVTQRYF
LVVLAEAPPTFNATIFVAISVTDVNDHTPWFPYNDNIVAFCVQEDMVNGTAVYVFNARDG
DGSLQNSELFYSLTFDPDVSKEELPFHINPHTGVLMTNTQLDRERSKSYIFKVTASDHMG
DPNNQKHPSVIAQVILLDVNDNSPTFVSVDTVRVSEDAELGLFFHHMMAKDEDEGSNGHV
IYSILSGNKKGYFHIEETGHLYLNTSLDYESQHYHILTVQATDNGVPSLSSTQTLTVEVQ
DVNDQPPVFQQHVYNTTVMENRERGEVVFTVTAVDMDSEENAAVNYSLLPGLGYELFVIN
SHTGQISTSTQLDREIQPRLTLRVQAEDSGTPSLSSTATVFCFILDDNDNTPQFSQPDLH
IIIPENLPLGVIHTVKASDIDNGLNGTIQYSIEENAKKYFSIDCVTGAINTTRVLDREER
SNYTLRITASDSGHPPLNSTALLHITLSDENDNIPTFTRKTYRATLREDLPVGSEIIHLI
ARDADEGSNGIVTYSLVEENSGNFHVDGSTGVIRLTKPLDRETRSQHVFRAVATDGCKLG
PRSSVAIVTIQVEDINDNPPSCLEENMRVSVASMSTRLHQPIFTVVARDPDQGDNGKVVF
SLAEDELFQVDRISGAVRLKAPLRNGVSGTHLLRVQAADLGRPSLTSNCLLLVQLNGDKP
QLQFTEELYEVTMLENSKTGSWVANVVAHDQTAEDATIKYSIFSGNENEAFTINLSTGDI
TVREQRLLDFEVERKIYLVVLADNGHQTAYARMTITMQDVNDNAPAFKQSYYRSAVWEGQ
IHNTFVMQVLATDSDSGANGQISYFIMDGNHNNAFVIDSVRGILATSTVLDREIVPSYKL
ILHAIDMGRPPLTGTCTVRVQVVDVNDNSPTIPSMEQVTIAENLPVGFIVTQVFANDVDL
SPVATYRFIEMDEASFAIDQYTGVITTTKRLDYENQTAYILRVEASDSVHPTVAELAIHV
LDVNDNPPVFSQESYQVVLPEWTPAHSYVVTVSATDRDSDQNGKVSYRLLFSPMKGFYID
AENGSVYTNKPLKYIANGNMLRFLVEARDSGDPSLFTVTSVDVEVTDSNDHAPYFTQNSY
HINVPEDVSVGSTLLILSAKDKDYSNENTYLEYAIAGGNDERCFCLDAVSIQTIEAHRQY
IGQVVLCDSLDREIADTYSITLMVRDKGTPPLNSSTVVTVNVLDINDHAPVFNSTEYYAQ
VSENSPLGTVLIHVSAHDPDLGHNGTVKYDIISGNSKGLIRLDSTTGVLDVFGTLDYEED
TKLTLIIQASDGGAPSEIKVSFACVYILVLDVNDNSPFFVFPTINCSVAENLPAFTPVCT
VHAVDEDAGNFGLLTYSIITPXFTDYDSTDPDQNEAFAINALTGDIYTKQTFDYERGSEF
CFVVEVRDKGDQVATLRVLVNIEGIDEFSPIFTQNVYHFSLPVNAKVAQSIGYLMAMDRD
GGLDGLVEYSLVNPSPFFNINKTTGSLFISNPVYQRQSSISKDTTENLMVLASSPKLDSR
SSTCYIVVNVSNSAKALSSAALRVQTTSVIVSLIVFFLLLLGFIALVIRYKSKERSVKKT
AYVTANLSHETDTFGRIGGSLHCNINGINLQDLQAPLDMWAKTDHANPLRNSDSSGRGSA
EDETTEDQEIKIINKFPCFKPLGSVTTQQPLRVSDLGIHNGSGQRFYRSSNKDLPSCANI
GIVQIVDMSSSESLHNFKEEGGGEGMLPQVVNMRDMEEVMKRCMSMPGDQGSVEGSLTNL
INSEDQLHGSYDGDYFFSWQPRFQSLAAVFTDIGMLPDEDIRDSDVEQESRSLLHPPPLI
TTVAHPGIRPVHPRMPHEGPTLLHSRRTELTPLEMTPSFSPSLSLLTVRTPSTSPVVSET
GLGHYIKISTLPRDVLENVEIQV
NT seq
9792 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaaaacttcaagaatgtgattaatgcttttcagtgttttctttcaaaaatgtgg
tttgattcacggactttgctgcggtttctcgtagcgacattattgtgtgctagttgttgc
gcgcaggtgtttaatctcagtctctccatagaggaaggattacctgcaaaaactgttgtc
ggggatataggagctggactacctgcgaaaattcgcaattctggattcttcatatctgag
agcaaagattcacatgtgttcaaagacttggaggtcgatggagacaccgggatcatctct
accgccgtggtgttggaccgagagcgcgtagagaagtatgagttttcggcggccacttta
acaagagacgttataaaagttatcattgaggtcaaggatataaacgataatttccccgtg
tttcccgcggaaacaatccggttgaatgtgtctgaattaagtccccctggaacacgtttt
gagctagaaggagctcaagatcaggataagggtgattatggcatccagggctacagaatt
aaagacacgaggaacatttttacagttgaaaatcgcaacaatgggggtaatgtgttcagt
ttagaccttattctaaaaggacgattagacagagaatctacagacctctatggtctcaca
attgaggcatttgatggtggtttaccaccaaaaacaggccagttacaggtgcatgttacc
gtattggatgaaaatgacaaccagccagtgttcaatcagtctgagtatcatgctgtcata
ttggaaagttccccattaatgacatctgtgtgccaggtatttgcaacagatccagatctc
ggcagcaatggcaaggttacttacaacattaaccgccgtcagagtgacccgaatgagttt
ttcattattgatagttcctctggaatcattagtgtaaataagcttttggactatgaaaaa
caggcattttttgagttcattgtgaccgcatgggattctgggactcagcctgaatcctcc
aatacttttgtcgttattaaagtcttggatgtcaatgataaccacccaaatattagcatt
ttgtttttaaatgaggctggagcacctgaggtatcagagggcgcagaacatggagaatat
gttgccaggattgcggtctcagaccctgatttaggggaggtcaaaaaactcaatgttctt
cttcaaggtgggaattcgatgttcactctcaaacccactgatgattttctttacgttctc
tgtgtggatggagaactggacagggaggtaaaggacctgtatgagctcactgtgattgct
tcagattttggcttacctcccctgaggaccgagacaacgtttcaagttcagatcactgac
gtgaatgacaatccacccgtttttgaaaaaaacacatatgaggagagtattgccgaagat
gtgcatgagggagtggctctcttacaagtgaaggccacggatagagatcaaggagggaac
tccgtaatcgtctactctattgtacagtcagaaatggagcatctttttgacatcgatcca
gcatcaggtgtcattactgttgctgcaagcttagactatgagaaacagtcagagttgaag
ttcttggtggtggctactgattgtggttctccatctctttccaccacagccactgtgagt
gtgactacccatttggaggatgtcaatgacaataaacccatatttcaacaacaattatac
aacttaaccatcaaagaacacacagccattgagacatgcctcttacaggtcactgccaca
gatgctgatgatgctgagtttggaaaagtgcagtacttcctctgtgatggctacagcggc
aaggatgcccatcctctcttcaaaatcaactctgttactggggaaatctgtgtggcccaa
gacattgactacgaagatggcattgtgacctttgacctcctgattaaagctgaagatcaa
gatggtctcaattcacagacatttgttcacatcgatgtggaggatgtgaatgataatggt
cctgtttttactcctgagagatatgtcacgagtttaagcagccatgcccaacctggcacc
aagctcctcagtgtgtttgcctctgaccaggattctggcaactatggggaaatcacctat
gagctgctgccaggagattctgcttctttattcaatgtggatcagtcgacaggagctgtc
tacctgaactcttcactgtctcaggtgcgaagtagcagtgtgaaactgtctgtctctgct
cgggacggaggagggctgtcgaccattaatcctgctaacatcaccgtgaacatcctacac
agccaacagcccctagccctcttccagaagccccactacaccttcttcatctctgaggat
gcacctgtgggatcctctgttggttcagttcaggctgttacacctgccaattcattggag
gtagtctcatacgttatatcctctggtgatccacaggggcttttcacagtagatacccac
acaggcatcatcactacaaacaaacttttagaccatgagtccatctctcgtgttctcctg
accttacagttccacacaggaacccttcctatctacagcagtgctcaggtcaatatctcc
ataacagatgtcaacgacaaccctcctgtattccccaagaactcagaacgcatcacctta
tcccataacacccctccagggacaccgctcttccttgcacatgctgaagatagtgacagt
ggccttaatggcagaattcattacgtgttgcatcctgagagccaactgtttaccattcac
ccacatctcgggactctcactctgaacagtgacctctctggcgattctcgacagaggtac
gagttcactattatagccaaagatgaaggtcaaccttctttgaactctactctagatctt
ataatagagatggacaaatcagacctggcagaagagacactatcctttgaaacattggta
taccaggtggaaattggagaaagtgccataaaagacaacagagtgattcaggttcgtgct
tatagttcaagaacccagagcagaggaacccatgccttaacatcccctgtcatcaaatac
tctcttgaacccatcactgtggtcccacctttcaggatccacccagagagtggatggatg
tttgtttctcagcgtcttgactacgaaactcaacccaagtacagattcagcatctatgca
accgtgcacgacggttcaatggaggccactgccacggcagctgtggttgttacggttcag
gatgagaatgacaatgcacctgtatttagtagggatgtgtatttctttagtgtgcaagag
ggaccagcccctcatgggctaataggaacagtaaaagccacagacagagattctcagaat
aatggaatgttatcctacatcctgttgtctgatggaaaatactttagcatcaactccaga
acaggagagatcataaacctggtggccttggatcgtgaggagcaggctcaacatgtgctg
agggtgatggtgacagatcagggtcgacctcgtctcaacagcacaactgttgtttacatt
ctagtcacagacatcaacgacaaccccccacagttcatgcacctgcctgcaactaaagag
ttaactatacaggtgtgggcaggcattccagtgggctctgttataatcagtatgtttgcc
aaagaccaggatgctggagaaaatggaactgtcaggtttctcataaaagatgatcgcatg
ggccactttagtagtgacagccggagtggggatatcaaggtgacagagcgattctcctca
aacccgcagatgaattataccctgaaggtggttgccatagacagtggctctgtacctctg
gaggagactgcagttgttcacatacaggtttatgctgattttcaaggcttcagacacttt
acggtacaagaagatgtgaagattggaactgttattggatcacttgggatttctatggca
ccagatacacagttgcgatactctattgtggagggcgatggaaagttgcagtttagtatc
caaagtggcgaactctatgtggcgcagcatctggactacgaagtcacacagcgttacttt
ttggttgtacttgcagaagccccgcccacattcaatgccaccatatttgtagcaatcagt
gtaactgatgtcaatgaccacaccccctggttcccctataatgacaacattgtagcattc
tgtgtccaggaggacatggtcaatggaacagcggtgtatgtctttaacgcacgcgatggg
gacggaagcctgcaaaacagtgagctgttttattctttgacctttgaccctgatgtttcc
aaagaggaactgccttttcacatcaaccctcacactggagtcctcatgacaaacacgcag
ctggaccgcgagcgtagcaaaagctacatatttaaagtgactgccagtgaccacatgggt
gaccctaacaatcagaaacatccctctgtcatagctcaggtgattctgttggacgtcaat
gacaacagccccacgtttgtttctgtggatacagttcgtgtctcagaagatgcagagttg
ggactgttttttcatcacatgatggccaaagatgaagatgaaggaagtaacggacatgtg
atttacagtattttatcaggaaataaaaagggctactttcacattgaagagacagggcat
ctgtacctgaacacttctctggattatgaatcccagcattaccacatcctcacagtacag
gccacagacaatggcgttccgtctctgtcttctactcagacactcacagtcgaggttcag
gatgttaatgatcagcctcctgttttccagcagcatgtttacaataccacagtaatggag
aacagagaacgaggagaggtcgttttcacggtcaccgcagttgacatggactcagaagag
aacgctgccgtgaactacagcctgctgcccggtttaggatatgagctcttcgtgataaac
tctcacaccggtcagatcagcacctccacacagctggaccgagagatccaacccagatta
actctcagagttcaggcagaggatagcggcacaccctctctctccagcaccgccacagtc
ttctgctttattcttgatgacaacgacaacactccacaattttcccagcctgacttgcac
ataataattccagaaaatttgcctcttggagtcattcacacggtcaaggcctcagatatt
gataatggactaaatggaacaattcagtactcaatagaagaaaatgcaaaaaaatatttt
agtattgactgtgtgactggggcaataaacaccactagagtcttggaccgagaggaacga
tcaaactacactctccgcatcactgcatctgacagtgggcatccacccctgaactccacc
gcactcctgcacattaccctctccgatgaaaacgacaacatccccacattcacacggaaa
acttaccgtgccacccttagggaggaccttcctgtcggttctgagatcatacatctcatt
gcacgggatgcagacgaggggtccaatggtatagtcacatactctttggtggaggagaat
tctggaaactttcatgttgatggctccactggcgtgatacgactgacgaaacctctggac
cgcgaaacccgttctcagcatgtttttcgtgctgtagctacagacggctgcaagctgggc
ccacgcagctcagtcgctatagttacgatacaagtagaagatattaatgacaacccacca
tcgtgtttggaggaaaacatgagggtgtcagtggcttccatgagcacacgtctccatcag
cccatctttacggttgtagcccgggatccagaccaaggggacaatgggaaggtggtgttt
agcttagcagaagatgagctgtttcaggttgacaggatttctggagccgtgaggttgaaa
gctcccttgaggaatggggtttcaggaacacacttactccgtgtgcaagctgcagatctg
ggtagaccttccctcacctccaattgtctgttgcttgttcagctgaacggagataaacca
cagttgcagtttacagaggagctctatgaagtcaccatgttggagaacagcaagacaggc
tcttgggtggcaaatgttgtagctcatgaccagacagcagaagatgcaacaatcaagtac
agtattttcagtggcaatgagaatgaagcctttactataaacctgagtacaggagatatc
actgttagggaacaaagactgctggactttgaggtagagcgtaaaatttatcttgtggtt
ctggctgataatggacaccagacagcttatgccagaatgaccatcactatgcaagatgtc
aatgacaacgcaccagcgttcaagcaaagctactacagatcagctgtttgggagggacaa
attcacaacacttttgttatgcaggtgttagccacagattctgacagtggtgcaaatgga
cagattagttatttcattatggatgggaaccacaataatgcattcgtcatcgactctgtt
cgtgggattcttgccaccagtacagtactggacagagagattgttccctcatacaagtta
attcttcacgccatagacatgggacgtccccctcttacaggcacctgcactgtccgtgtc
caggttgtagatgtcaatgataatagccctacgataccatccatggaacaagtgaccatt
gcagaaaatcttcctgttggttttattgtcactcaagtgtttgcaaatgatgttgacctt
agtcctgtagcaacgtacagatttatagagatggatgaggcaagctttgcaattgaccag
tacacaggagtgattaccacgactaaaagactggactatgagaatcaaacggcctatata
ctaagagtggaagcatcagactctgtccatccaacagtggctgaactcgccatacacgtg
ctggatgtcaatgataaccccccagtcttttctcaggagtcgtatcaggttgtgttgcca
gagtggacacctgcacactcgtatgttgtgactgtatcagcaactgatagagattctgac
caaaatggaaaagtttcttataggcttcttttctccccaatgaaaggcttttacattgat
gcagaaaatggttcagtgtatacaaacaagcctctgaagtatattgcaaatggaaacatg
ctgcggtttttggtggaagcacgggacagtggtgacccaagcctatttactgtcacttct
gtggatgtcgaggtgacggactctaatgatcacgccccttactttacgcagaactcgtac
cacattaatgttcctgaggatgtgtctgttggaagcactctcctcattctgtcagcaaaa
gacaaggactattcaaatgaaaacacttatttggagtatgcaattgcgggtggaaatgac
gaaaggtgcttttgcctagatgctgttagcattcagaccatagaagcccatagacaatat
attggccaggtggtgctttgtgatagtctggatcgagagatcgctgacacttactccata
actttgatggtacgagacaagggaacgcctccgcttaacagctcaactgttgtgacagtc
aacgtgcttgatattaatgaccatgcacctgtttttaacagtacagagtactatgcgcag
gtcagtgagaacagcccccttggtactgttcttatccacgtctctgctcatgatcctgat
ctagggcacaatggcacggtaaaatatgacatcatctcaggtaacagcaagggcctgatc
agactagattctacaacaggtgtccttgatgtttttgggacacttgactatgaagaggac
actaaattgaccctaataatccaagcctcagatggcggggcaccaagtgaaataaaggtg
tcttttgcttgtgtatacatattagtactggatgtaaatgacaattccccattcttcgtg
ttccctactatcaactgctcggtggctgaaaacctgccggcttttacccccgtgtgcaca
gtacatgctgtcgatgaagatgcaggaaactttggattactgacctattccatcataacc
ccgnntttcacggactatgatagtacagacccggatcaaaatgaagcatttgctattaat
gcacttactggagacatctatacaaaacagacgtttgactatgaaagagggagtgaattt
tgctttgttgtagaagtgcgtgacaaaggagatcaggtggcaaccttgagagtactggtt
aatattgaaggcattgatgagttcagccctatatttactcagaatgtgtaccatttctct
ttgccagttaatgccaaggttgcccaaagcataggttacttgatggccatggatcgcgat
gggggtctggatggcttggtggaatactctttggtcaacccatccccatttttcaacatc
aataaaacaactggcagtttatttatttcaaacccagtgtatcagagacaaagttccatc
tctaaagacacaacagagaacttaatggttttggcaagcagccccaaactggactccagg
tcgtcaacttgctacatagttgtgaatgtatccaattctgcaaaggctctatcaagcgct
gctctccgtgtccagaccaccagtgtcattgtgtcattaatagtgttcttcttacttttg
ttaggcttcattgcacttgtcattaggtacaagtccaaagagaggtcggtcaagaagaca
gcttacgttactgctaacctcagccacgagactgacacttttggtaggataggtggcagt
cttcactgcaacataaacggtattaacctccaagatttacaagcaccattagacatgtgg
gcaaaaactgatcatgcgaacccattgaggaactctgactcaagtggaagaggatctgca
gaggatgagactactgaggatcaagaaatcaagatcatcaacaaatttccttgcttcaaa
cctcttggatcagtcacaactcaacagccattaagagtctcagacttagggatccacaat
ggctcaggccaacgcttttatcgctcttcaaataaagatctgccttcttgtgccaatata
ggaatagtccaaatagtggacatgtctagttccgagagtctccacaatttcaaggaagaa
ggtggaggtgagggaatgctccctcaggtggtcaacatgagggacatggaggaggtcatg
aaaagatgcatgtccatgcctggtgaccagggttcagttgagggctcacttactaatctg
attaactctgaggatcaactacatggcagctatgatggggactacttttttagctggcag
ccacgcttccaatctttggctgctgtttttacagacattggcatgcttccagatgaagat
attagggatagtgacgtggaacaagagtctcgcagcctcctgcacccaccgcctctcatc
acaacagttgcccatccaggaatacgtcctgtacaccccaggatgccacatgaaggacct
accctattacacagtagaagaacagaattgacccctttagaaatgactcccagtttctcg
ccctctctgtcactgcttactgttaggacacccagtacctctccagtggtgtcagaaaca
gggttgggacactacataaaaatatcaacactgccaagagatgttttagaaaatgtagag
atacaagtgtag
DBGET
integrated database retrieval system
