Triplophysa rosa: 130552789
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Entry
130552789 CDS
T09216
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tros03009
]
130552789 (pdcd11)
Ribosome biogenesis [BR:
tros03009
]
Eukaryotic type
90S particles
Other 90S particles
130552789 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
TPR_19
TPR_14
HAT_Syf1_CNRKL1_C
CvfB_2nd
ARM_TT21
PPR
DUF7017
TPR_12
DUF2110
Mad3_BUB1_I
HAT_Syf1_M
RPN7
TPR_16
Motif
Other DBs
NCBI-GeneID:
130552789
NCBI-ProteinID:
XP_057187347
LinkDB
All DBs
Position
LG4:complement(27369412..27383323)
Genome browser
AA seq
1795 aa
AA seq
DB search
MEADFPRGGTQKSSVDKSVKSHEVDNLFQTQEPVVKKKRKTVKQDDGENFKKHKVDDRGL
KLNTADGVEILHFLNLKVGTLLLGCVREVSDLEAVVGLPSGLVGYLPIRNICDAYTKILI
EQLESLDSFEEVVTLSELLTPGTLVRCVVSSLNSVNKGQISLKLSINPKEVNKCLSAAAL
KPGMTLSGCVESVEDHGFLVDIGINGTKAFLPKKSTSTKQDLKVGQYVLSLIEEVKNEGR
VVRLSLNPQAVNKAVAGTQQGWTLDSLLPGLLIRVHIKRVTPHGLVVEYLSSFSGTVDFL
HIDQDKASCYKSGNEVLARVLYIEPSSRAVALSLRSHLLPPGGSVLGNFTSEQIGEVVQG
CKMTAVHHHSGALMELPDGTKAFVHRKRMKEPKEEFNASRLLAKPEHNMRITDYSPMEQI
HMASLRKSNIEATFFRYQDIQVGQIIEATVISLQKLGMFVRVTDHIKGMIPRNHLADVVL
TNPEKKFHEGMKLKCRVLSVDEANKRLLLTRKKALIESRLPIIQSYSDARVGRVAHGSIM
CVKKYGCIVRFYGEVKGLVPVQEMSTEHVTDPEDLFFVGQVVKAKVIKCNAESEKLVLSF
KAVTEVDVIQTQTAQFDFEIGKTVDVRVSRKVLDGLEVSVLPEEIPAFLPTVHLSDHVTN
CLLLWDALEEGDNISDVVCLNKNKRGINLTKKPSLKACLEDGNVPTGFSELQVGMQMVGW
VKNIMPYGVFIDFPRGLFGLAPKAAMCEQFITDTSNVFTIGQTVVAKVTNLDEEKNRFLV
SLKVSELNLSEEDAHARLIQGQKERKAIIEMVTCRGESDLLEQLSSVSVGDKIKMVVEDV
KEDGTVTLTSDRLSEAIVLASKHHTTGVNTTPGCKLTAVVLHVDPLKSQVLVSLLPTLTR
KRKSLSNDSEHAATIQYIDKDFAVVSLGDTGHLTIIPAKTQLNDVVDLESFSVGSCLNVI
VKDPSREELGGLPLVACKGQDQQVKSKSKAQMHSLGVMVTAKVTKLKPLGVLVMLPSGTT
GHIHVSEIEESPVVGSLPTSSLKVGAEVQAKVIGGHTVRGNRFLPVTHPNFKLALPELTI
LPRKLEGGSMQTVDKLKHYKPGHEVICFPSKYDKQLKCLEVHVKSNIMGTVELLAMISKP
GQANNPQKLFKPGQAVLAKVVGNNPSRTGQLSLSLTGIYKLEQGSVTMGMVWKIEPHRGL
FVKLPFGNSGLVSLMDLSDEYSDNPLEPYKEGQVIRCCIIGEEKGHFNVSLRTSRTNKVQ
QEKVTDPEIQSISDIKEGQIVRGYVKTVGVSGIFVRLSRSLEGRVQLQHATKYYINKPEV
ISKHVTQNALVTAKVLSVDTENIHVSLSLLTKDTGKSDILPESLKLPSRLPEDKKKTHNR
TKRKRVSSESQQQDEKKHGKKAKKNKASTVTEERVDKKKAKKEDSDSGVEVFFREEDDDE
PNKECEKKNPKEPERLQISWDFSWDTTLSSLTPAAVDQVYESSEDEEEDQSKPVKKTRKE
LQQEQQNAEQQLSKLEAELMDPSVRPDNATAFERLLLSSPDSSFLWLQYMAFHLQATQIE
QARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTEESLQKVFERAIQYCEPLPVYQQ
LADIYAKSDKLKEAESLYKSMVKRFRQEKAVYESYGNFLLRQGQSNAANALLQRALQSLS
NKDHVDLITKFARLEFQYGNTERAKSMFDKVLGTYSKRTDLWSVFIDLMVKHGSQKEVRE
IFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPESIQAVKQKALEYVESKGADAAS
NT seq
5388 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagatttccctcgaggtggcacacagaagtcttctgtggacaaatccgtgaag
tcccatgaagtggacaatctctttcagacacaggaaccagtggttaaaaagaagagaaag
actgtgaaacaggatgatggggagaactttaaaaaacacaaagtggatgataggggttta
aagcttaatacggctgacggtgtggaaattcttcattttctgaatctgaaggttggcact
ctgctgcttggctgtgtaagggaagtgtcagatttggaggccgtcgtgggtctgccaagt
ggccttgttggttaccttccaatccgtaacatctgtgacgcttacacaaagatccttatt
gaacaactggagtctttagacagttttgaggaagttgtcactctctctgaacttctgact
cctggaactctggtcagatgtgttgtatcttctttaaactctgttaataagggccagatt
agtcttaaattgtcgatcaacccaaaagaggttaacaagtgtttgagtgcagctgctttg
aaacctggaatgactctgagtggttgtgtggagagtgtggaagatcacgggttcctggtt
gacattggaatcaacggcactaaagctttcctgcccaagaagagtacgtccacaaaacaa
gatctaaaggtgggccagtatgtattaagtctcatcgaggaggtcaagaacgaaggacgt
gtggtgcgcttgtctctgaacccccaggctgtcaataaggctgtcgcagggactcagcaa
ggatggactctagacagtctcctgcccggcctgctgatccgggtgcacataaaaagggtg
actcctcatgggcttgttgtagagtatctctcgtcttttagtggcacggttgattttttg
catattgatcaagacaaagcatcctgctacaaatcgggcaatgaggtcctggcacgggtt
ttgtacatagagccctcctctcgggcggttgccctctccctgcgcagccatctcttgcca
ccagggggcagtgtacttggtaacttcaccagtgagcagattggagaggtggttcagggc
tgtaaaatgactgccgtgcaccatcactccggggccttgatggagttgcccgacggtacc
aaggcttttgtgcacagaaaaagaatgaaggagccgaaagaagaattcaacgcgagtcgt
ttgctggccaagcccgaacataatatgagaataacagattacagcccaatggagcaaatt
cacatggcttcactacgcaagagcaacattgaagcaacgttcttcagataccaagacatc
caagtggggcaaattattgaggccacagttatcagtttgcagaaactgggtatgtttgtg
agggtaacagaccacatcaaaggaatgatacccagaaatcacctggctgacgtggtcctg
acaaacccagagaaaaagtttcacgagggcatgaaactcaagtgcagggtcttatcagtg
gatgaagctaataagcggctactcctgaccagaaaaaaggccctgatcgagtccaggctc
cccatcatccagtcatactctgatgccagggtgggccgcgtcgctcatggctccattatg
tgcgtgaagaagtatggctgcattgtgcggttttacggggaagtgaaaggcttggttcct
gtgcaggagatgtcaaccgagcatgtgaccgatccagaagatctcttctttgttggccag
gttgtcaaagccaaagtgataaagtgtaatgcagaaagtgagaaactggtcttgtctttc
aaagccgtaactgaagttgatgtaatacagacacagactgctcagtttgactttgagatt
ggaaagacggttgatgtaagagtcagcagaaaagtcctggatggcctcgaggtctccgtt
ctacctgaggagatcccagctttccttcccacggtacatctgtctgatcatgtgaccaac
tgccttctcctgtgggatgcgctggaggagggggacaacatctcagacgtagtttgtctc
aacaagaacaagaggggcattaatctcactaagaaaccttcactgaaggcctgtctggag
gatggaaacgtccctacagggttctccgagctgcaggtggggatgcagatggtgggctgg
gtgaagaacatcatgccttacggagtcttcatcgactttcctcgcggactcttcggcctt
gcccctaaagctgccatgtgcgagcagttcatcacagacacatccaacgtcttcacgatt
ggccagacggtggttgccaaggtgaccaatctggacgaggagaagaacaggtttctggtc
agtctgaaggtgtcggaattgaatctctctgaggaagacgcccatgccagactgatccag
ggtcagaaggagaggaaggccatcattgagatggtgacatgcagaggtgaatctgacctt
ctggagcagctctcatctgtatcagtcggagataaaattaagatggtcgtggaagatgtc
aaagaggacggaacggtcacgctgacctccgatcggctcagcgaggccatcgtattggcc
tccaaacatcacacgacaggagtgaatacgactccaggttgcaaactcacggctgtggtg
cttcacgtcgaccctttgaaatcacaagtacttgtgtcgctgttgccgacattgaccaga
aagagaaaatctctgagtaacgactcggaacacgccgccacaatccaatacattgacaaa
gactttgctgtcgtctcattgggtgatacgggtcacctgaccatcattcccgctaagaca
caattaaatgacgtcgtcgatttggaatcgttttccgttgggtcctgtctgaatgtgatt
gtgaaggacccgagcagagaggaattgggtgggcttcctctcgtggcttgcaaaggccag
gaccagcaggtcaaatcgaagagcaaagcgcaaatgcacagtcttggggtgatggtgact
gccaaagtcacaaagttgaaacccttgggcgtgctcgtgatgttgccgtcagggaccacg
ggtcacatccatgtgtctgagatagaggagtcgcctgttgtcggcagccttccgacatcg
tccctgaaggtcggggcggaggtccaagccaaagtgatcggaggacacacagttcgtgga
aacaggttcctgccggtcacccaccccaactttaagttggctcttcctgaacttacaata
ttgccaaggaaactggaaggcggttccatgcagacagttgacaaactgaagcactacaaa
cccggccacgaggtcatctgcttcccctcaaagtacgacaaacaattgaaatgcctagaa
gttcacgtgaagtccaacatcatgggtaccgttgagctgttggccatgataagcaaacct
gggcaagcgaataacccacagaagctctttaaacctggccaggccgttttagcaaaggtt
gttgggaataatccaagcaggactggtcaactttccctgtcactcacagggatatacaag
ctagagcagggatcggtcaccatggggatggtttggaaaatcgagcctcaccggggactg
tttgtcaaacttccgtttgggaattcgggtcttgtgtcgttgatggatctctccgacgag
tactcggacaacccactggagccttacaaagagggccaagtgatccggtgctgtattatc
ggggaagaaaagggacatttcaatgtttcgctacgtacttccagaacaaataaggttcag
caggagaaagttacagacccagaaattcagtccatttctgacataaaagagggtcagatt
gtcagaggatatgtgaaaactgttggggtttcgggcatatttgtgaggttgtcaaggtcc
ctagaggggagagttcagttacaacacgctacgaaatactacataaataagccggaggtg
atatccaaacacgttacccagaatgcattggttactgccaaggttctcagcgtggacaca
gagaacatccacgtgtccctgtcactgctcacaaaagacaccgggaaatcggatattctc
ccagaatccctcaaactgccatcgcgtctgccggaagacaaaaagaagacgcacaaccga
accaagaggaagcgtgtgtcctctgagagccagcaacaagatgaaaagaaacatgggaaa
aaggcgaaaaagaataaggctagcacagtgacggaggaacgcgtagataagaagaaagca
aaaaaagaagacagtgatagcggcgtggaggtgttcttcagagaggaagacgatgacgaa
ccgaataaagagtgtgagaagaagaatccaaaggaacccgagcggctgcagatatcatgg
gacttctcctgggacactacgctgagctctttaactcccgcagccgtggaccaggtatac
gagtccagcgaagatgaggaggaagaccagagcaagcctgtgaagaagactcgtaaagag
ctccagcaggagcagcagaatgcagaacagcagctcagcaagctggaggcggagcttatg
gacccgtcggttcggccggacaacgccacagcgtttgagcgcctgctcctctcgtccccg
gacagctcgttcctctggctgcagtacatggcctttcatctgcaggccacacagatcgag
caggcgcgagctgtcgctgagagagccctcaaaaccatctccttcagagaggagcaggag
aagctgaacatttgggtggccatgctgaacctggagaacatgtacggcaccgaggagagt
ttgcagaaggttttcgagcgcgccattcagtactgcgaacccctgcctgtttaccagcag
ctagccgacatttacgccaagtcagacaagctcaaagaagcggagagtctttataaaagc
atggtgaagcgcttcaggcaagagaaagctgtgtatgagagttacggcaactttctgctg
cggcagggtcagagcaatgctgctaatgccctcctgcagagggcgctgcagagtctgtcc
aataaagatcatgtcgacttgatcaccaagtttgcccgtcttgagttccagtacgggaac
accgagagagccaaatccatgtttgacaaggtcctcggaacctactccaaacgtactgac
ctgtggtcagtgttcatagacctgatggtgaagcatggctctcagaaggaagtgagggag
attttcgatcgtgtgattcacctgagcgtgtcggtgaagaagatcaagttcttctttaag
cgttacctggagtacgagaagaaacatggcacacccgagagcatccaggcggtcaaacag
aaagctctggaatatgtggagtctaaaggagcggacgccgccagctag
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integrated database retrieval system
