KEGG   Triplophysa rosa: 130552834
Entry
130552834         CDS       T09216                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tros  Triplophysa rosa
Pathway
tros03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tros00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    130552834 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tros03021]
    130552834 (taf5l)
   03036 Chromosome and associated proteins [BR:tros03036]
    130552834 (taf5l)
Transcription machinery [BR:tros03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     130552834 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     130552834 (taf5l)
Chromosome and associated proteins [BR:tros03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     130552834 (taf5l)
    STAGA complex
     130552834 (taf5l)
    TFTC complex
     130552834 (taf5l)
    SAGA complex
     130552834 (taf5l)
    SLIK complex
     130552834 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I WDR55 TFIID_NTD2 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_IFT140_1st RMC1_N Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_IP5PC_F WD40_RFWD3 Beta-prop_WDR19_1st PEP5_VPS11_N PROPPIN Beta-prop_DCAF12 TRIP13_N Nbas_N Beta-prop_ELP1_1st Mala_s_1-like
Other DBs
NCBI-GeneID: 130552834
NCBI-ProteinID: XP_057187440
LinkDB
Position
LG4:complement(29565878..29570229)
AA seq 614 aa
MYSAEFVLQLKPSEMKRVRTEQIQNAVTQYLKRRQYIDTDGCLKGAKLSQSAEEMAASLT
VQTETSCANVVSAAPCQSDPQQYESQFSRLRSFLQDAEAPWTKEVSGVLFPLFLYLHLDM
ARCGLKGSVDSFYGRFHSFFQQDPEQKAIVDLLRGVVSLQDVTSNPKLCSLRDHKYVVHM
TDQAYNYLLRYLQSDDNGAICWVLGAHIQVEVTAVRRTDYQLYGTGLGEGNATSSSVTWT
AVDGMEGAEPVEVTAGLPQNEAALDALQDCIKRVREGPPSLTTVCFYAFQHTDQLLNTAE
VSADSRLLAAGFDNSAVKLWSLRARKLKVGPHKADVSKIRLACDLLEEEADDEDASGSEI
KTLRAHSGPVYRTAFLTDGSGLLSCSEDSTVRFWDLNSFTNTVLYRGHAYPVWDVDVSPC
SLYFATASHDRTARLWSFARTYPLRLYAGHLSDVDCVKFHPNSSYIATGSTDKTVRLWSM
QQGASVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLFKDLRGHTDSITS
LSFSPDSSLVASGSMDNSVRVWDIRNTHGTAPSDGSSSELIGQYTGNTSNILNVQFMACN
LLLVTGTALEKQEQ
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgtattctgctgagtttgtattacaactcaaaccatcagagatgaagcgggtccggaca
gaacagatccagaatgccgtgacccagtacctgaaaaggagacagtacatagacacagat
gggtgtctgaagggggccaaactctcccagtctgctgaagagatggctgctagtctgact
gttcagacagagaccagttgtgcaaatgtggtgtccgcagccccctgtcaatcagacccc
cagcaatacgagtcccagttctccagactgcgctcctttctgcaagatgcagaggcgccg
tggacgaaagaggtgagtggcgtattgtttccgctcttcctctacctgcacttggacatg
gcacgctgtggtctgaaggggtcggtagactcgttctacggacgtttccattcgttcttc
cagcaagaccctgagcagaaagctatcgtggatcttctgcgaggagtcgtttcgctgcag
gatgtgacctccaaccccaagctgtgttctctccgggatcacaagtatgtggttcacatg
acagatcaagcctacaactacctgctgcgataccttcaaagcgacgacaacggtgccatc
tgctgggtgctcggcgcacacatacaggtggaggtaacggcagtacgacgaacggactac
cagctgtacgggacggggctcggagagggaaacgcaacctcctcctccgtcacctggact
gcagtggatgggatggagggggcggagcctgtagaggtcacagctgggttacctcagaac
gaggccgcgttggatgcgttgcaggattgcataaagcgtgtgcgagagggtccgccctcg
ctcaccaccgtctgcttctacgcgttccagcacactgaccagctgctcaacactgcagag
gtgtcggcggacagccgcctgctcgccgcagggttcgataactctgcagtgaagctctgg
agcttacgggcgcggaagctgaaggtggggcctcacaaggccgacgtgtctaagatcaga
ctcgcctgcgacctgctggaggaagaggcagatgatgaggacgcctcaggcagcgaaatt
aagaccctgcgtgctcacagcggccccgtgtaccgcacggcattcctgacggacggctcc
ggcctcctgtcctgttcggaggactccaccgtgcgcttctgggatctcaacagcttcacc
aacacggtcctctaccgtggccacgcctaccccgtctgggacgtggacgtcagtccatgc
agcctgtacttcgccacggcgtctcacgaccgcaccgctcgcctctggagcttcgcacgc
acgtacccgctccgcctctacgccgggcacctctccgatgtcgactgtgtgaaattccac
cccaactccagctacattgcgacgggatccaccgacaaaaccgtacgcctgtggagcatg
cagcagggggcgtccgtcaggttgttcacggggcaccggggacccgtgctgtcgctcgcc
ttctcgcccaatggaaagtatttagcgtctgccggggaggatcagagactgaagctatgg
gacctcgcgtccgggaccctgttcaaagacctccggggtcacacggacagcatcaccagc
ctttcctttagccccgacagtagtctggttgcttcggggtccatggataactcggtgcgg
gtttgggacatacgaaacacacatggcaccgccccgtctgatggctccagcagcgagctg
attggacagtacacagggaacactagtaatatactcaacgtgcagttcatggcctgtaat
ctgctgcttgtgacgggcacagcgctggagaaacaagagcagtag

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